Vamp8 (vesicle associated membrane protein 8) - Rat Genome Database
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Gene: Vamp8 (vesicle associated membrane protein 8) Ictidomys tridecemlineatus
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Symbol: Vamp8
Name: vesicle associated membrane protein 8
RGD ID: 12681959
Description: ENCODES a protein that exhibits chloride channel inhibitor activity (ortholog); SNAP receptor activity (ortholog); syntaxin binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagosome membrane docking (ortholog); cellular response to interferon-gamma (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Mammary Neoplasms, Experimental (ortholog); FOUND IN azurophil granule membrane (ortholog); basolateral plasma membrane (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: vesicle-associated membrane protein 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367121,688,126 - 1,689,742 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Vamp8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367121,688,126 - 1,689,742 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VAMP8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl285,561,562 - 85,582,031 (+)EnsemblGRCh38hg38GRCh38
GRCh38285,577,535 - 85,582,031 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37285,804,709 - 85,809,154 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,658,228 - 85,662,665 (+)NCBINCBI36hg18NCBI36
Build 34285,716,374 - 85,720,811NCBI
Celera285,632,880 - 85,637,440 (+)NCBI
Cytogenetic Map2p11.2NCBI
HuRef285,701,916 - 85,706,329 (+)NCBIHuRef
CHM1_1285,734,420 - 85,738,962 (+)NCBICHM1_1
Vamp8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,362,204 - 72,367,650 (-)NCBIGRCm39mm39
GRCm39 Ensembl672,362,206 - 72,367,686 (-)Ensembl
GRCm38672,385,221 - 72,390,667 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,385,223 - 72,390,703 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,335,215 - 72,340,661 (-)NCBIGRCm37mm9NCBIm37
MGSCv36672,314,732 - 72,320,090 (-)NCBImm8
Celera674,475,546 - 74,480,987 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
Vamp8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,442,383 - 104,452,884 (-)NCBI
Rnor_6.0 Ensembl4100,250,301 - 100,252,755 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04100,250,301 - 100,252,756 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04165,020,594 - 165,023,049 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,692,451 - 105,694,908 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14105,936,931 - 105,939,387 (-)NCBI
Celera493,595,511 - 93,597,967 (-)NCBICelera
Cytogenetic Map4q31NCBI
Vamp8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,923,092 - 1,926,728 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,922,830 - 1,926,844 (-)NCBIChiLan1.0ChiLan1.0
VAMP8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A87,180,681 - 87,185,195 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,180,681 - 87,185,195 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A85,627,678 - 85,632,205 (+)NCBIMhudiblu_PPA_v0panPan3
VAMP8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1739,497,785 - 39,501,739 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11739,497,628 - 39,501,734 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
VAMP8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1359,187,900 - 59,193,165 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,249,017 - 62,254,147 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VAMP8
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,575,057 - 21,580,054 (-)NCBI
ChlSab1.1 Ensembl1421,575,161 - 21,579,820 (-)Ensembl
Vamp8
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474917,558,429 - 17,562,765 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021735341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGTP01097949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021735341   ⟹   XP_021591016
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049367121,688,126 - 1,689,742 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021591016 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021591016   ⟸   XM_021735341
- Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005962 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000005326 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005953 ENTREZGENE, UniProtKB/TrEMBL
InterPro Synaptobrevin UniProtKB/TrEMBL
  Synaptobrevin/VAMP UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/TrEMBL
NCBI Gene Vamp8 ENTREZGENE
PANTHER PTHR45701 UniProtKB/TrEMBL
Pfam Synaptobrevin UniProtKB/TrEMBL
PRINTS SYNAPTOBREVN UniProtKB/TrEMBL
PROSITE SYNAPTOBREVIN UniProtKB/TrEMBL
  V_SNARE UniProtKB/TrEMBL
UniProt I3M704_ICTTR UniProtKB/TrEMBL