Ntng2 (netrin G2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ntng2 (netrin G2) Ictidomys tridecemlineatus
Analyze
Symbol: Ntng2
Name: netrin G2
RGD ID: 12681070
Description: INVOLVED IN axonogenesis (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); Developmental Disabilities (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); FOUND IN glutamatergic synapse (ortholog); presynaptic active zone membrane (ortholog); Schaffer collateral - CA1 synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: netrin G2, transcript variant X1; netrin G2, transcript variant X2; netrin G2, transcript variant X3; netrin G2, transcript variant X4; netrin G2, transcript variant X5; netrin G2, transcript variant X6; netrin-G2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947199,010,942 - 199,069,718 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648718,783,058 - 18,837,481 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648718,779,470 - 18,838,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Ntng2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947199,010,942 - 199,069,718 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648718,783,058 - 18,837,481 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648718,779,470 - 18,838,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTNG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389132,161,689 - 132,244,526 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9132,162,058 - 132,244,526 (+)EnsemblGRCh38hg38GRCh38
GRCh379135,037,445 - 135,119,913 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369134,031,955 - 134,108,040 (+)NCBINCBI36Build 36hg18NCBI36
Build 349132,071,687 - 132,147,773NCBI
Celera9105,579,329 - 105,660,166 (+)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9104,531,594 - 104,612,230 (+)NCBIHuRef
CHM1_19135,187,365 - 135,268,272 (+)NCBICHM1_1
T2T-CHM13v2.09144,375,733 - 144,459,025 (+)NCBIT2T-CHM13v2.0
Ntng2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,084,738 - 29,138,111 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,084,553 - 29,143,017 (-)EnsemblGRCm39 Ensembl
GRCm38229,194,726 - 29,248,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl229,194,541 - 29,253,005 (-)EnsemblGRCm38mm10GRCm38
MGSCv37229,050,341 - 29,103,560 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,016,830 - 29,070,049 (-)NCBIMGSCv36mm8
Celera228,900,873 - 28,954,149 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map219.57NCBI
Ntng2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8332,889,856 - 32,949,032 (-)NCBIGRCr8
mRatBN7.2312,492,574 - 12,551,104 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl312,492,639 - 12,545,890 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx315,566,693 - 15,620,142 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0324,151,669 - 24,205,123 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0322,405,256 - 22,458,522 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.037,742,511 - 7,800,834 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl37,742,531 - 7,796,385 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0313,091,083 - 13,144,474 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.438,171,757 - 8,225,139 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.138,172,301 - 8,230,387 (-)NCBI
Celera37,271,739 - 7,325,057 (-)NCBICelera
Cytogenetic Map3p12NCBI
Ntng2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555131,654,398 - 1,701,062 (+)NCBIChiLan1.0ChiLan1.0
NTNG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2117,112,493 - 7,195,435 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan197,114,829 - 7,196,883 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09103,281,915 - 103,362,786 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19131,917,736 - 131,999,801 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9131,917,760 - 131,998,107 (+)Ensemblpanpan1.1panPan2
NTNG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1951,994,593 - 52,004,620 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha951,259,084 - 51,328,052 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0952,887,566 - 52,956,348 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl952,885,397 - 52,952,624 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1951,667,388 - 51,736,273 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0951,992,390 - 52,061,523 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0952,078,430 - 52,147,219 (-)NCBIUU_Cfam_GSD_1.0
NTNG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1272,012,112 - 272,077,018 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11272,007,513 - 272,077,105 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21306,097,010 - 306,136,659 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NTNG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1125,897,613 - 5,978,129 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl125,899,459 - 5,972,660 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660799,622,919 - 9,705,946 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ntng2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,016,441 - 4,067,126 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,016,441 - 4,067,325 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021723653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021723654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021723655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021723656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021723657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000010573   ⟹   ENSSTOP00000009490
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648718,783,931 - 18,837,479 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000023723   ⟹   ENSSTOP00000022612
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648718,783,931 - 18,837,479 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000036076   ⟹   ENSSTOP00000025874
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648718,783,058 - 18,826,569 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000036298   ⟹   ENSSTOP00000030408
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648718,783,931 - 18,837,479 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000038817   ⟹   ENSSTOP00000032289
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648718,783,773 - 18,837,481 (+)Ensembl
RefSeq Acc Id: XM_005321102   ⟹   XP_005321159
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,011,607 - 199,069,718 (+)NCBI
SpeTri2.0NW_00493648718,782,791 - 18,838,245 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021723653   ⟹   XP_021579328
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,011,604 - 199,069,718 (+)NCBI
SpeTri2.0NW_00493648718,779,470 - 18,838,245 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040286516   ⟹   XP_040142450
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,010,942 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286517   ⟹   XP_040142451
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,010,942 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286518   ⟹   XP_040142452
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,011,601 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286519   ⟹   XP_040142453
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,011,601 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286520   ⟹   XP_040142454
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,010,942 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286521   ⟹   XP_040142455
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,010,942 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286522   ⟹   XP_040142456
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,010,942 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286523   ⟹   XP_040142457
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,010,942 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286524   ⟹   XP_040142458
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,011,601 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286525   ⟹   XP_040142459
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,011,602 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286526   ⟹   XP_040142460
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,011,602 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286527   ⟹   XP_040142461
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,011,602 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286528   ⟹   XP_040142462
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,011,605 - 199,069,718 (+)NCBI
RefSeq Acc Id: XM_040286529   ⟹   XP_040142463
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947199,011,604 - 199,069,718 (+)NCBI
RefSeq Acc Id: XP_005321159   ⟸   XM_005321102
- Peptide Label: isoform X9
- UniProtKB: A0A287DFG8 (UniProtKB/TrEMBL),   I3MFR7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579328   ⟸   XM_021723653
- Peptide Label: isoform X5
- UniProtKB: A0A287DA36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040142450   ⟸   XM_040286516
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142451   ⟸   XM_040286517
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142454   ⟸   XM_040286520
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142457   ⟸   XM_040286523
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142455   ⟸   XM_040286521
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142456   ⟸   XM_040286522
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142458   ⟸   XM_040286524
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040142453   ⟸   XM_040286519
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142452   ⟸   XM_040286518
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142459   ⟸   XM_040286525
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040142460   ⟸   XM_040286526
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040142461   ⟸   XM_040286527
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040142463   ⟸   XM_040286529
- Peptide Label: isoform X8
RefSeq Acc Id: XP_040142462   ⟸   XM_040286528
- Peptide Label: isoform X7
- UniProtKB: I3NE15 (UniProtKB/TrEMBL),   A0A287DA36 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000022612   ⟸   ENSSTOT00000023723
RefSeq Acc Id: ENSSTOP00000032289   ⟸   ENSSTOT00000038817
RefSeq Acc Id: ENSSTOP00000009490   ⟸   ENSSTOT00000010573
RefSeq Acc Id: ENSSTOP00000025874   ⟸   ENSSTOT00000036076
RefSeq Acc Id: ENSSTOP00000030408   ⟸   ENSSTOT00000036298

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010575 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010573.3 UniProtKB/TrEMBL
  ENSSTOT00000023723.2 UniProtKB/TrEMBL
  ENSSTOT00000036076.1 UniProtKB/TrEMBL
  ENSSTOT00000036298.1 UniProtKB/TrEMBL
  ENSSTOT00000038817.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
NCBI Gene Ntng2 ENTREZGENE
PANTHER NETRIN-G2 UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
UniProt A0A287CX88_ICTTR UniProtKB/TrEMBL
  A0A287DA36 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DFG8 ENTREZGENE, UniProtKB/TrEMBL
  I3MFR7 ENTREZGENE, UniProtKB/TrEMBL
  I3NE15 ENTREZGENE, UniProtKB/TrEMBL