Rpl14 (ribosomal protein L14) - Rat Genome Database

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Gene: Rpl14 (ribosomal protein L14) Ictidomys tridecemlineatus
Analyze
Symbol: Rpl14
Name: ribosomal protein L14
RGD ID: 12679071
Description: ENCODES a protein that exhibits RNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN ribosomal large subunit biogenesis (inferred); rRNA processing (inferred); translation (inferred); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH genetic disease (ortholog); Parkinson's disease (ortholog); renal cell carcinoma (ortholog); FOUND IN cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118196,264,248 - 196,268,799 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647329,402,813 - 29,410,978 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647329,402,874 - 29,406,065 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rpl14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118196,264,248 - 196,268,799 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647329,402,813 - 29,410,978 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647329,402,874 - 29,406,065 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38340,457,339 - 40,468,587 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl340,457,292 - 40,468,587 (+)EnsemblGRCh38hg38GRCh38
GRCh37340,498,830 - 40,510,078 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36340,473,805 - 40,478,863 (+)NCBINCBI36Build 36hg18NCBI36
Build 34340,473,818 - 40,478,862NCBI
Celera340,441,631 - 40,446,697 (+)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef340,542,849 - 40,547,946 (+)NCBIHuRef
CHM1_1340,449,375 - 40,454,457 (+)NCBICHM1_1
T2T-CHM13v2.0340,472,412 - 40,483,675 (+)NCBIT2T-CHM13v2.0
Rpl14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399120,400,579 - 120,403,724 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9120,400,510 - 120,403,720 (+)EnsemblGRCm39 Ensembl
GRCm389120,571,517 - 120,574,653 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,571,444 - 120,574,654 (+)EnsemblGRCm38mm10GRCm38
MGSCv379120,480,634 - 120,483,770 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369120,420,214 - 120,423,350 (+)NCBIMGSCv36mm8
Celera9121,041,119 - 121,044,256 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map971.74NCBI
Rpl14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88129,163,620 - 129,166,745 (+)NCBIGRCr8
mRatBN7.28120,286,035 - 120,289,160 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,284,645 - 120,289,064 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8125,863,219 - 125,866,076 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08124,062,237 - 124,065,094 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08121,904,654 - 121,907,538 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08129,240,528 - 129,243,400 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8129,240,528 - 129,243,402 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08128,438,421 - 128,441,293 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48125,582,095 - 125,584,968 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18125,601,831 - 125,604,704 (+)NCBI
Celera8119,428,067 - 119,430,939 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rpl14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542029,426,694 - 29,435,126 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542029,430,757 - 29,434,669 (-)NCBIChiLan1.0ChiLan1.0
RPL14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2240,417,822 - 40,422,866 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1340,422,584 - 40,427,631 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0340,362,235 - 40,367,349 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1340,632,699 - 40,637,697 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl340,632,762 - 40,637,697 (+)Ensemblpanpan1.1panPan2
RPL14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1239,907,479 - 9,911,114 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl239,907,479 - 9,911,114 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha239,942,051 - 9,945,706 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02310,194,701 - 10,198,342 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2310,194,701 - 10,198,342 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12310,005,062 - 10,008,711 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02310,142,962 - 10,146,601 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02310,130,617 - 10,134,279 (+)NCBIUU_Cfam_GSD_1.0
LOC100739087
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1156,689,050 - 56,689,768 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2163,408,784 - 63,409,444 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1221,949,789 - 1,954,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl221,949,817 - 1,954,466 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041165,248,722 - 165,263,817 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473078,282,230 - 78,288,647 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473078,284,389 - 78,288,242 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005317407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000027793   ⟹   ENSSTOP00000017326
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647329,402,813 - 29,410,978 (+)Ensembl
RefSeq Acc Id: XM_005317407   ⟹   XP_005317464
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118196,264,248 - 196,268,799 (+)NCBI
SpeTri2.0NW_00493647329,402,874 - 29,406,065 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005317464 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017326.2
GenBank Protein KAG3279670 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005317464   ⟸   XM_005317407
- UniProtKB: I3MYY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000017326   ⟸   ENSSTOT00000027793
Protein Domains
Large ribosomal subunit protein eL14


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021460 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027793.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.30 UniProtKB/TrEMBL
  6.10.250.2270 UniProtKB/TrEMBL
InterPro Rib_L2_dom2 UniProtKB/TrEMBL
  Ribosomal_L14e_dom UniProtKB/TrEMBL
  Ribosomal_protein_L14 UniProtKB/TrEMBL
  RPL14_KOW UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
NCBI Gene Rpl14 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L14 UniProtKB/TrEMBL
  PTHR11127 UniProtKB/TrEMBL
Pfam Ribosomal_L14e UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt I3MYY0 ENTREZGENE, UniProtKB/TrEMBL