Dpf1 (double PHD fingers 1) - Rat Genome Database

Name: Dpf1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Dpf1 (double PHD fingers 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Dpf1

Name:

double PHD fingers 1

RGD ID:

12678197

Description:

ENCODES a protein that exhibits histone binding (inferred); histone H3K4 methyltransferase activity (inferred); metal ion binding (inferred); INVOLVED IN nervous system development (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN nBAF complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

double PHD fingers 1, transcript variant X1; double PHD fingers 1, transcript variant X2; double PHD fingers 1, transcript variant X3; double PHD fingers 1, transcript variant X4; double PHD fingers 1, transcript variant X5; double PHD fingers 1, transcript variant X6; double PHD fingers 1, transcript variant X7; zinc finger protein neuro-d4

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DPF1 (double PHD fingers 1)	NCBI	Ortholog
Mus musculus (house mouse):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,440 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936801	1,004,832 - 1,017,924 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936801	1,004,841 - 1,013,784 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA)

nervous system development (ISO)

positive regulation of transcription by RNA polymerase II (IEA)

Cellular Component

MLL3/4 complex (IEA)

nBAF complex (ISO)

nucleus (IEA)

Molecular Function

histone binding (IEA)

histone H3K4 methyltransferase activity (IEA)

metal ion binding (IEA)

protein binding (ISO)

sequence-specific double-stranded DNA binding (IEA)

transcription coactivator activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

SWI/SNF family mediated chromatin remodeling pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Dpf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,440 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936801	1,004,832 - 1,017,924 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936801	1,004,841 - 1,013,784 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DPF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	38,211,006 - 38,229,695 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	38,211,006 - 38,229,714 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	38,701,646 - 38,720,335 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	43,394,187 - 43,406,628 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	35,503,879 - 35,522,555 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	35,150,952 - 35,163,719 (-)	NCBI		HuRef
CHM1_1	19	38,701,990 - 38,720,649 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	41,013,164 - 41,031,861 (-)	NCBI		T2T-CHM13v2.0

Dpf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	29,003,366 - 29,017,017 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	29,003,376 - 29,017,668 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	29,303,952 - 29,317,592 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	29,303,951 - 29,318,243 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	30,089,024 - 30,102,605 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	29,012,765 - 29,026,346 (+)	NCBI		MGSCv36	mm8
Celera	7	23,874,277 - 23,887,947 (+)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	16.94	NCBI

Dpf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	93,729,683 - 93,743,425 (+)	NCBI		GRCr8
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	84,602,336 - 84,615,950 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	90,017,817 - 90,027,416 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	98,477,595 - 98,487,176 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	91,773,664 - 91,783,261 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	87,248,448 - 87,258,070 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	87,248,489 - 87,258,070 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	84,444,143 - 84,452,889 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	84,522,204 - 84,531,762 (+)	NCBI
Celera	1	78,992,981 - 79,002,564 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Dpf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	1,195,146 - 1,211,311 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	1,195,152 - 1,209,774 (+)	NCBI	ChiLan1.0	ChiLan1.0

DPF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	44,497,664 - 44,516,778 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	46,368,445 - 46,387,559 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	35,301,009 - 35,320,126 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	43,875,879 - 43,888,611 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	43,875,879 - 43,889,021 (-)	Ensembl	panpan1.1		panPan2

DPF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	114,753,368 - 114,763,965 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	114,757,864 - 114,765,602 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	114,156,599 - 114,169,906 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	115,355,095 - 115,368,417 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	115,341,775 - 115,368,228 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	114,927,843 - 114,941,151 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	114,545,960 - 114,559,268 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	115,595,566 - 115,608,875 (+)	NCBI		UU_Cfam_GSD_1.0

DPF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	47,142,702 - 47,155,346 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	47,142,006 - 47,155,340 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	42,620,257 - 42,627,472 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DPF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	32,855,371 - 32,873,889 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	32,856,436 - 32,868,067 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	10,795,683 - 10,815,054 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dpf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	11,700,139 - 11,714,979 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005340487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005340488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000027229 ⟹ ENSSTOP00000023088

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936801	1,005,852 - 1,017,924 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000035324 ⟹ ENSSTOP00000024238

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936801	1,004,841 - 1,013,784 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000041740 ⟹ ENSSTOP00000030492

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936801	1,004,832 - 1,013,800 (-)	Ensembl

RefSeq Acc Id:

XM_005340487 ⟹ XP_005340544

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,438 (-)	NCBI
SpeTri2.0	NW_004936801	1,004,841 - 1,013,784 (-)	NCBI

Sequence:

show sequence

CGCCCCCCGGGAATGAATGGATGGGCGGCCTCAGCGCCCGCCCGACCGCTGGGAGGACCGACCC
GCCGGGGACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTG
AGCCTAGGCGAGGACTTCTACCGCGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGT
GCGCCGAGCGCAGCCTGCGCCTGCCTTTCCTCGACTCGCAGACCGGTGTGGCCCAAAACAACTG
CTACATCTGGATGGAGAAGACCCACCGCGGCCCCGGTTTGGCCCCAGGACAGATCTACACCTAT
CCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTAGAGGACCCCAGACTCCGACCCT
GCGAGTACAAGATCGACTGTGAGGCACCCCTGAAGAAGGAAGGTGGCCTTCCAGAAGGGCCAGT
CCTCGAGGCTCTGCTGTGTGCTGAGACAGGGGAGAAGAAGGTCGAGCTGAAGGAGGAGGAGACC
ATTATGGACTGTCAGAAACAGCAGTTGCTGGAGTTCCCACATGATCTCGAGGTGGAAGACTTGG
AGGATGACATTCCCAGGAGGAAGAACAGGGCCAAAGGAAAGGCATATGGCATCGGGGGTCTACG
GAAACGCCAGGACACCGCTTCCCTGGAGGACCGAGACAAGCCGTATGTCTGTGATATCTGTGGG
AAGCGGTATAAGAACCGGCCGGGGCTGAGCTACCACTACACCCACACCCACCTGGCCGAGGAGG
AGGGGGAGGAGCACGCCGAGCGCCACGCCCTGCCCTTCCACCGGAAAAACAACCACAAACAGTT
TTACAAAGAATTGGCCTGGGTCCCCGAGGCACAAAGGAAACACACAGCCAAGAAGGCGCCTGAC
GGCACCGTCATCCCCAACGGCTACTGTGACTTCTGCCTGGGGGGCTCCAAGAAGACCGGGTGTC
CTGAGGACCTCATCTCCTGTGCAGACTGTGGGCGATCAGGACACCCCTCGTGTTTACAGTTCAC
GGTGAACATGACAGCGGCTGTGCGGACCTACCGCTGGCAGTGCATCGAGTGCAAGTCCTGCAGC
CTGTGTGGCACCTCGGAGAACGACGACCAGCTGCTGTTTTGTGATGACTGCGATCGGGGTTACC
ACATGTACTGCCTGAGCCCCCCCATGGCGGAGCCCCCAGAAGGGAGCTGGAGTTGTCACCTCTG
CCTTCGGCACCTGAAAGAAAAGGCCTCTGCCTACATCACCCTCACCTAGGCCTGGCTCTGGTTC
TCCGGACTCCAGGGTGGTGCTTGCCCACCTGCCTCTCGCCCCACCCTGCGCCCCAGTGTGAGGG
GAGAGGGTGACGCCCCGGGGCTGGGCCGCCCGTCCCCTGCCAGTGAGATGCTGGCCTGTCCCCT
GCCAGTGAGATGCTGGCCCTGTGGGTGGGTGGCCCCTGCCCCTCCCCTCCAATCCCTTGGCAAA
TGGGCACCAGGGGCTTCTGCTCCCCTCAAAGCCATACCCCGCCTCTGGGCGGGCACGAGGGGTA
GTGATGCCAGCCAGGGGCATGGACAGAGCCTTTTTCTAAAGAAAAAGACAAAAACTAAAAAAAA
AAAAAAAAGAAAAAAAGGAAAAAGAAAAAAAGAAATTAATATATACGAAGAGTCCTGTGAGGCC
TGGCTGGGTGGAAGGGCACTGCCGAGCGTCCACTGGGCACCCTTCTAGGCCAGCTTCCTGCCTG
GTGCCCCACCCCCACTTCTGGAGTCGCAGCTGTCCCACCTCCCCACCTACGGTGGGCACCGTTC
CCCTTGTGCCCAGGGTGGGTGGGCATGGTGTCCACCCTCGCCCCCTCCTGGTGCCCACCGTGGA
TACTGCATGATGTGAACCATGGTTTTGAACTCTGTTCCTGCCCCTCCCTGACAGCCCCACCCCG
TGCCCACTGGTGCCAGCCGTGCCATAGGCACCGTGGCGCGAGGCGGCCCTACCCAGCGCCCGCT
GGGACGAGAAGCACAGACCTGCAAAGGACTCGTTTTTTTTCCTCCTTCCTGCTGCCCCCCGCCG
ACCCTGCTGGCCATTTTGGGGGCAGCAAGGTGGCGCAGTTGTTTCTTGTGGTTGTGTGTGTTTG
TTGTTCGGGTTTAAAAAAGGGAAATTGAGACTGCAGGTGGGGGTGGGTCTGGGGGTCCCCCCAG
TCCAGGAGAACCCTCCCTGTACCCGAGTCTCCTTCATTGCCTGCCTCTGCTGTGAAATACCTTG
TTCTGTGTATTAAACTGGCCTGACCCCTCTGCCCAC

hide sequence

RefSeq Acc Id:

XM_005340488 ⟹ XP_005340545

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,439 (-)	NCBI
SpeTri2.0	NW_004936801	1,004,841 - 1,013,784 (-)	NCBI

Sequence:

show sequence

CGCCCCCCGGGAATGAATGGATGGGCGGCCTCAGCGCCCGCCCGACCGCTGGGAGGACCGACCC
GCCGGGGACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTG
AGCCTAGGCGAGGACTTCTACCGCGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGT
GCGCCGAGCGCAGCCTGCGCCTGCCTTTCCTCGACTCGCAGACCGGTGTGGCCCAAAACAACTG
CTACATCTGGATGGAGAAGACCCACCGCGGCCCCGGTTTGGCCCCAGGACAGATCTACACCTAT
CCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTAGAGGACCCCAGACTCCGACCCT
GCGAGTACAAGATCGACTGTGAGGCACCCCTGAAGAAGGAAGGTGGCCTTCCAGAAGGGCCAGT
CCTCGAGGCTCTGCTGTGTGCTGAGACAGGGGAGAAGAAGGTCGAGCTGAAGGAGGAGGAGACC
ATTATGGACTGTCAGAAACAGCAGTTGCTGGAGTTCCCACATGATCTCGAGGTGGAAGACTTGG
AGGATGACATTCCCAGGAGGAAGAACAGGGCCAAAGGAAAGGCATATGGCATCGGGGGTCTACG
GAAACGCCAGGACACCGCTTCCCTGGAGGACCGAGACAAGCCGTATGTCTGTGATATCTGTGGG
AAGCGGTATAAGAACCGGCCGGGGCTGAGCTACCACTACACCCACACCCACCTGGCCGAGGAGG
AGGGGGAGGAGCACGCCGAGCGCCACGCCCTGCCCTTCCACCGGAAAAACAACCACAAACAGTT
TTACAAAGAATTGGCCTGGGTCCCCGAGGCACAAAGGAAACACACAGCCAAGAAGGCGCCTGAC
GGCACCGTCATCCCCAACGGCTACTGTGACTTCTGCCTGGGGGGCTCCAAGAAGACCGGGTGTC
CTGAGGACCTCATCTCCTGTGCAGACTGTGGGCGATCAGGACACCCCTCGTGTTTACAGTTCAC
GGTGAACATGACAGCGGCTGTGCGGACCTACCGCTGGCAGTGCATCGAGTGCAAGTCCTGCAGC
CTGTGTGGCACCTCGGAGAACGACGGTGCCAGCTGGGCGGGTCTCACCCCCCAGGACCAGCTGC
TGTTTTGTGATGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCCCCCATGGCGGAGCC
CCCAGAAGGGAGCTGGAGTTGTCACCTCTGCCTTCGGCACCTGAAAGAAAAGGCCTCTGCCTAC
ATCACCCTCACCTAGGCCTGGCTCTGGTTCTCCGGACTCCAGGGTGGTGCTTGCCCACCTGCCT
CTCGCCCCACCCTGCGCCCCAGTGTGAGGGGAGAGGGTGACGCCCCGGGGCTGGGCCGCCCGTC
CCCTGCCAGTGAGATGCTGGCCTGTCCCCTGCCAGTGAGATGCTGGCCCTGTGGGTGGGTGGCC
CCTGCCCCTCCCCTCCAATCCCTTGGCAAATGGGCACCAGGGGCTTCTGCTCCCCTCAAAGCCA
TACCCCGCCTCTGGGCGGGCACGAGGGGTAGTGATGCCAGCCAGGGGCATGGACAGAGCCTTTT
TCTAAAGAAAAAGACAAAAACTAAAAAAAAAAAAAAAAGAAAAAAAGGAAAAAGAAAAAAAGAA
ATTAATATATACGAAGAGTCCTGTGAGGCCTGGCTGGGTGGAAGGGCACTGCCGAGCGTCCACT
GGGCACCCTTCTAGGCCAGCTTCCTGCCTGGTGCCCCACCCCCACTTCTGGAGTCGCAGCTGTC
CCACCTCCCCACCTACGGTGGGCACCGTTCCCCTTGTGCCCAGGGTGGGTGGGCATGGTGTCCA
CCCTCGCCCCCTCCTGGTGCCCACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCTG
TTCCTGCCCCTCCCTGACAGCCCCACCCCGTGCCCACTGGTGCCAGCCGTGCCATAGGCACCGT
GGCGCGAGGCGGCCCTACCCAGCGCCCGCTGGGACGAGAAGCACAGACCTGCAAAGGACTCGTT
TTTTTTCCTCCTTCCTGCTGCCCCCCGCCGACCCTGCTGGCCATTTTGGGGGCAGCAAGGTGGC
GCAGTTGTTTCTTGTGGTTGTGTGTGTTTGTTGTTCGGGTTTAAAAAAGGGAAATTGAGACTGC
AGGTGGGGGTGGGTCTGGGGGTCCCCCCAGTCCAGGAGAACCCTCCCTGTACCCGAGTCTCCTT
CATTGCCTGCCTCTGCTGTGAAATACCTTGTTCTGTGTATTAAACTGGCCTGACCCCTCTGCCC
AC

hide sequence

RefSeq Acc Id:

XM_021720315 ⟹ XP_021575990

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,439 (-)	NCBI
SpeTri2.0	NW_004936801	1,004,841 - 1,013,713 (-)	NCBI

Sequence:

show sequence

ACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTGAGCCTAG
GCGAGGACTTCTACCGCGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGTGCGCCGA
GCGCAGCCTGCGCCTGCCTTTCCTCGACTCGCAGACCGGTGTGGCCCAAAACAACTGCTACATC
TGGATGGAGAAGACCCACCGCGGCCCCGGTTTGGCCCCAGGACAGATCTACACCTATCCCGCCC
GCTGTTGGAGGAAGAAACGGAGACTCAACATCCTAGAGGACCCCAGACTCCGACCCTGCGAGTA
CAAGATCGACTGTGAGGCACCCCTGAAGAAGGAAGGTGGCCTTCCAGAAGGGCCAGTCCTCGAG
GCTCTGCTGTGTGCTGAGACAGGGGAGAAGAAGGTCGAGCTGAAGGAGGAGGAGACCATTATGG
ACTGTCAGAAACAGCAGTTGCTGGAGTTCCCACATGATCTCGAGGTGGAAGACTTGGAGGATGA
CATTCCCAGGAGGAAGAACAGGGCCAAAGGAAAGGGCTCCTCGCTTTCGGGGTCCCTCACTCCT
GACCCTTCCCCCAGGCATATGGCATCGGGGGTCTACGGAAACGCCAGGACACCGCTTCCCTGGA
GGACCGAGACAAGCCTCTGTGGGAAGCGGTATAAGAACCGGCCGGGGCTGAGCTACCACTACAC
CCACACCCACCTGGCCGAGGAGGAGGGGGAGGAGCACGCCGAGCGCCACGCCCTGCCCTTCCAC
CGGAAAAACAACCACAAACAGTTTTACAAAGAATTGGCCTGGGTCCCCGAGGCACAAAGGAAAC
ACACAGCCAAGAAGGCGCCTGACGGCACCGTCATCCCCAACGGCTACTGTGACTTCTGCCTGGG
GGGCTCCAAGAAGACCGGGTGTCCTGAGGACCTCATCTCCTGTGCAGACTGTGGGCGATCAGGA
CACCCCTCGTGTTTACAGTTCACGGTGAACATGACAGCGGCTGTGCGGACCTACCGCTGGCAGT
GCATCGAGTGCAAGTCCTGCAGCCTGTGTGGCACCTCGGAGAACGACGGTGCCAGCTGGGCGGG
TCTCACCCCCCAGGACCAGCTGCTGTTTTGTGATGACTGCGATCGGGGTTACCACATGTACTGC
CTGAGCCCCCCCATGGCGGAGCCCCCAGAAGGGAGCTGGAGTTGTCACCTCTGCCTTCGGCACC
TGAAAGAAAAGGCCTCTGCCTACATCACCCTCACCTAGGCCTGGCTCTGGTTCTCCGGACTCCA
GGGTGGTGCTTGCCCACCTGCCTCTCGCCCCACCCTGCGCCCCAGTGTGAGGGGAGAGGGTGAC
GCCCCGGGGCTGGGCCGCCCGTCCCCTGCCAGTGAGATGCTGGCCTGTCCCCTGCCAGTGAGAT
GCTGGCCCTGTGGGTGGGTGGCCCCTGCCCCTCCCCTCCAATCCCTTGGCAAATGGGCACCAGG
GGCTTCTGCTCCCCTCAAAGCCATACCCCGCCTCTGGGCGGGCACGAGGGGTAGTGATGCCAGC
CAGGGGCATGGACAGAGCCTTTTTCTAAAGAAAAAGACAAAAACTAAAAAAAAAAAAAAAAGAA
AAAAAGGAAAAAGAAAAAAAGAAATTAATATATACGAAGAGTCCTGTGAGGCCTGGCTGGGTGG
AAGGGCACTGCCGAGCGTCCACTGGGCACCCTTCTAGGCCAGCTTCCTGCCTGGTGCCCCACCC
CCACTTCTGGAGTCGCAGCTGTCCCACCTCCCCACCTACGGTGGGCACCGTTCCCCTTGTGCCC
AGGGTGGGTGGGCATGGTGTCCACCCTCGCCCCCTCCTGGTGCCCACCGTGGATACTGCATGAT
GTGAACCATGGTTTTGAACTCTGTTCCTGCCCCTCCCTGACAGCCCCACCCCGTGCCCACTGGT
GCCAGCCGTGCCATAGGCACCGTGGCGCGAGGCGGCCCTACCCAGCGCCCGCTGGGACGAGAAG
CACAGACCTGCAAAGGACTCGTTTTTTTTCCTCCTTCCTGCTGCCCCCCGCCGACCCTGCTGGC
CATTTTGGGGGCAGCAAGGTGGCGCAGTTGTTTCTTGTGGTTGTGTGTGTTTGTTGTTCGGGTT
TAAAAAAGGGAAATTGAGACTGCAGGTGGGGGTGGGTCTGGGGGTCCCCCCAGTCCAGGAGAAC
CCTCCCTGTACCCGAGTCTCCTTCATTGCCTGCCTCTGCTGTGAAATACCTTGTTCTGTGTATT
AAACTGGCCTGACCCCTCTGCCCAC

hide sequence

RefSeq Acc Id:

XM_021720316 ⟹ XP_021575991

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,440 (-)	NCBI
SpeTri2.0	NW_004936801	1,004,841 - 1,013,713 (-)	NCBI

Sequence:

show sequence

ACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTGAGCCTAG
GCGAGGACTTCTACCGCGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGTGCGCCGA
GCGCAGCCTGCGCCTGCCTTTCCTCGACTCGCAGACCGGTGTGGCCCAAAACAACTGCTACATC
TGGATGGAGAAGACCCACCGCGGCCCCGGTTTGGCCCCAGGACAGATCTACACCTATCCCGCCC
GCTGTTGGAGGAAGAAACGGAGACTCAACATCCTAGAGGACCCCAGACTCCGACCCTGCGAGTA
CAAGATCGACTGTGAGGCACCCCTGAAGAAGGAAGGTGGCCTTCCAGAAGGGCCAGTCCTCGAG
GCTCTGCTGTGTGCTGAGACAGGGGAGAAGAAGGTCGAGCTGAAGGAGGAGGAGACCATTATGG
ACTGTCAGCAGTTGCTGGAGTTCCCACATGATCTCGAGGTGGAAGACTTGGAGGATGACATTCC
CAGGAGGAAGAACAGGGCCAAAGGAAAGGGCTCCTCGCTTTCGGGGTCCCTCACTCCTGACCCT
TCCCCCAGGCATATGGCATCGGGGGTCTACGGAAACGCCAGGACACCGCTTCCCTGGAGGACCG
AGACAAGCCTCTGTGGGAAGCGGTATAAGAACCGGCCGGGGCTGAGCTACCACTACACCCACAC
CCACCTGGCCGAGGAGGAGGGGGAGGAGCACGCCGAGCGCCACGCCCTGCCCTTCCACCGGAAA
AACAACCACAAACAGTTTTACAAAGAATTGGCCTGGGTCCCCGAGGCACAAAGGAAACACACAG
CCAAGAAGGCGCCTGACGGCACCGTCATCCCCAACGGCTACTGTGACTTCTGCCTGGGGGGCTC
CAAGAAGACCGGGTGTCCTGAGGACCTCATCTCCTGTGCAGACTGTGGGCGATCAGGACACCCC
TCGTGTTTACAGTTCACGGTGAACATGACAGCGGCTGTGCGGACCTACCGCTGGCAGTGCATCG
AGTGCAAGTCCTGCAGCCTGTGTGGCACCTCGGAGAACGACGGTGCCAGCTGGGCGGGTCTCAC
CCCCCAGGACCAGCTGCTGTTTTGTGATGACTGCGATCGGGGTTACCACATGTACTGCCTGAGC
CCCCCCATGGCGGAGCCCCCAGAAGGGAGCTGGAGTTGTCACCTCTGCCTTCGGCACCTGAAAG
AAAAGGCCTCTGCCTACATCACCCTCACCTAGGCCTGGCTCTGGTTCTCCGGACTCCAGGGTGG
TGCTTGCCCACCTGCCTCTCGCCCCACCCTGCGCCCCAGTGTGAGGGGAGAGGGTGACGCCCCG
GGGCTGGGCCGCCCGTCCCCTGCCAGTGAGATGCTGGCCTGTCCCCTGCCAGTGAGATGCTGGC
CCTGTGGGTGGGTGGCCCCTGCCCCTCCCCTCCAATCCCTTGGCAAATGGGCACCAGGGGCTTC
TGCTCCCCTCAAAGCCATACCCCGCCTCTGGGCGGGCACGAGGGGTAGTGATGCCAGCCAGGGG
CATGGACAGAGCCTTTTTCTAAAGAAAAAGACAAAAACTAAAAAAAAAAAAAAAAGAAAAAAAG
GAAAAAGAAAAAAAGAAATTAATATATACGAAGAGTCCTGTGAGGCCTGGCTGGGTGGAAGGGC
ACTGCCGAGCGTCCACTGGGCACCCTTCTAGGCCAGCTTCCTGCCTGGTGCCCCACCCCCACTT
CTGGAGTCGCAGCTGTCCCACCTCCCCACCTACGGTGGGCACCGTTCCCCTTGTGCCCAGGGTG
GGTGGGCATGGTGTCCACCCTCGCCCCCTCCTGGTGCCCACCGTGGATACTGCATGATGTGAAC
CATGGTTTTGAACTCTGTTCCTGCCCCTCCCTGACAGCCCCACCCCGTGCCCACTGGTGCCAGC
CGTGCCATAGGCACCGTGGCGCGAGGCGGCCCTACCCAGCGCCCGCTGGGACGAGAAGCACAGA
CCTGCAAAGGACTCGTTTTTTTTCCTCCTTCCTGCTGCCCCCCGCCGACCCTGCTGGCCATTTT
GGGGGCAGCAAGGTGGCGCAGTTGTTTCTTGTGGTTGTGTGTGTTTGTTGTTCGGGTTTAAAAA
AGGGAAATTGAGACTGCAGGTGGGGGTGGGTCTGGGGGTCCCCCCAGTCCAGGAGAACCCTCCC
TGTACCCGAGTCTCCTTCATTGCCTGCCTCTGCTGTGAAATACCTTGTTCTGTGTATTAAACTG
GCCTGACCCCTCTGCCCAC

hide sequence

RefSeq Acc Id:

XM_021720317 ⟹ XP_021575992

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,439 (-)	NCBI
SpeTri2.0	NW_004936801	1,004,841 - 1,013,713 (-)	NCBI

Sequence:

show sequence

ACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTGAGCCTAG
GCGAGGACTTCTACCGCGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGTGCGCCGA
GCGCAGCCTGCGCCTGCCTTTCCTCGACTCGCAGACCGGTGTGGCCCAAAACAACTGCTACATC
TGGATGGAGAAGACCCACCGCGGCCCCGGTTTGGCCCCAGGACAGATCTACACCTATCCCGCCC
GCTGTTGGAGGAAGAAACGGAGACTCAACATCCTAGAGGACCCCAGACTCCGACCCTGCGAGTA
CAAGATCGACTGTGAGGCACCCCTGAAGAAGGAAGGTGGCCTTCCAGAAGGGCCAGTCCTCGAG
GCTCTGCTGTGTGCTGAGACAGGGGAGAAGAAGGTCGAGCTGAAGGAGGAGGAGACCATTATGG
ACTGTCAGCAGTTGCTGGAGTTCCCACATGATCTCGAGGTGGAAGACTTGGAGGATGACATTCC
CAGGAGGAAGAACAGGGCCAAAGGAAAGGCATATGGCATCGGGGGTCTACGGAAACGCCAGGAC
ACCGCTTCCCTGGAGGACCGAGACAAGCCGTATGTCTGTGATATCTGTGGGAAGCGGTATAAGA
ACCGGCCGGGGCTGAGCTACCACTACACCCACACCCACCTGGCCGAGGAGGAGGGGGAGGAGCA
CGCCGAGCGCCACGCCCTGCCCTTCCACCGGAAAAACAACCACAAACCCAAGAAGGCGCCTGAC
GGCACCGTCATCCCCAACGGCTACTGTGACTTCTGCCTGGGGGGCTCCAAGAAGACCGGGTGTC
CTGAGGACCTCATCTCCTGTGCAGACTGTGGGCGATCAGGACACCCCTCGTGTTTACAGTTCAC
GGTGAACATGACAGCGGCTGTGCGGACCTACCGCTGGCAGTGCATCGAGTGCAAGTCCTGCAGC
CTGTGTGGCACCTCGGAGAACGACGGTGCCAGCTGGGCGGGTCTCACCCCCCAGGACCAGCTGC
TGTTTTGTGATGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCCCCCATGGCGGAGCC
CCCAGAAGGGAGCTGGAGTTGTCACCTCTGCCTTCGGCACCTGAAAGAAAAGGCCTCTGCCTAC
ATCACCCTCACCTAGGCCTGGCTCTGGTTCTCCGGACTCCAGGGTGGTGCTTGCCCACCTGCCT
CTCGCCCCACCCTGCGCCCCAGTGTGAGGGGAGAGGGTGACGCCCCGGGGCTGGGCCGCCCGTC
CCCTGCCAGTGAGATGCTGGCCTGTCCCCTGCCAGTGAGATGCTGGCCCTGTGGGTGGGTGGCC
CCTGCCCCTCCCCTCCAATCCCTTGGCAAATGGGCACCAGGGGCTTCTGCTCCCCTCAAAGCCA
TACCCCGCCTCTGGGCGGGCACGAGGGGTAGTGATGCCAGCCAGGGGCATGGACAGAGCCTTTT
TCTAAAGAAAAAGACAAAAACTAAAAAAAAAAAAAAAAGAAAAAAAGGAAAAAGAAAAAAAGAA
ATTAATATATACGAAGAGTCCTGTGAGGCCTGGCTGGGTGGAAGGGCACTGCCGAGCGTCCACT
GGGCACCCTTCTAGGCCAGCTTCCTGCCTGGTGCCCCACCCCCACTTCTGGAGTCGCAGCTGTC
CCACCTCCCCACCTACGGTGGGCACCGTTCCCCTTGTGCCCAGGGTGGGTGGGCATGGTGTCCA
CCCTCGCCCCCTCCTGGTGCCCACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCTG
TTCCTGCCCCTCCCTGACAGCCCCACCCCGTGCCCACTGGTGCCAGCCGTGCCATAGGCACCGT
GGCGCGAGGCGGCCCTACCCAGCGCCCGCTGGGACGAGAAGCACAGACCTGCAAAGGACTCGTT
TTTTTTCCTCCTTCCTGCTGCCCCCCGCCGACCCTGCTGGCCATTTTGGGGGCAGCAAGGTGGC
GCAGTTGTTTCTTGTGGTTGTGTGTGTTTGTTGTTCGGGTTTAAAAAAGGGAAATTGAGACTGC
AGGTGGGGGTGGGTCTGGGGGTCCCCCCAGTCCAGGAGAACCCTCCCTGTACCCGAGTCTCCTT
CATTGCCTGCCTCTGCTGTGAAATACCTTGTTCTGTGTATTAAACTGGCCTGACCCCTCTGCCC
AC

hide sequence

RefSeq Acc Id:

XM_021720318 ⟹ XP_021575993

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,438 (-)	NCBI
SpeTri2.0	NW_004936801	1,004,841 - 1,013,713 (-)	NCBI

Sequence:

show sequence

ACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTGAGCCTAG
GCGAGGACTTCTACCGCGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGTGCGCCGA
GCGCAGCCTGCGCCTGCCTTTCCTCGACTCGCAGACCGGTGTGGCCCAAAACAACTGCTACATC
TGGATGGAGAAGACCCACCGCGGCCCCGGTTTGGCCCCAGGACAGATCTACACCTATCCCGCCC
GCTGTTGGAGGAAGAAACGGAGACTCAACATCCTAGAGGACCCCAGACTCCGACCCTGCGAGTA
CAAGATCGACTGTGAGGCACCCCTGAAGAAGGAAGGTGGCCTTCCAGAAGGGCCAGTCCTCGAG
GCTCTGCTGTGTGCTGAGACAGGGGAGAAGAAGGTCGAGCTGAAGGAGGAGGAGACCATTATGG
ACTGTCAGCAGTTGCTGGAGTTCCCACATGATCTCGAGGTGGAAGACTTGGAGGATGACATTCC
CAGGAGGAAGAACAGGGCCAAAGGAAAGGCATATGGCATCGGGGGTCTACGGAAACGCCAGGAC
ACCGCTTCCCTGGAGGACCGAGACAAGCCGTATGTCTGTGATATCTGTGGGAAGCGGTATAAGA
ACCGGCCGGGGCTGAGCTACCACTACACCCACACCCACCTGGCCGAGGAGGAGGGGGAGGAGCA
CGCCGAGCGCCACGCCCTGCCCTTCCACCGGAAAAACAACCACAAACCCAAGAAGGCGCCTGAC
GGCACCGTCATCCCCAACGGCTACTGTGACTTCTGCCTGGGGGGCTCCAAGAAGACCGGGTGTC
CTGAGGACCTCATCTCCTGTGCAGACTGTGGGCGATCAGGACACCCCTCGTGTTTACAGTTCAC
GGTGAACATGACAGCGGCTGTGCGGACCTACCGCTGGCAGTGCATCGAGTGCAAGTCCTGCAGC
CTGTGTGGCACCTCGGAGAACGACGACCAGCTGCTGTTTTGTGATGACTGCGATCGGGGTTACC
ACATGTACTGCCTGAGCCCCCCCATGGCGGAGCCCCCAGAAGGGAGCTGGAGTTGTCACCTCTG
CCTTCGGCACCTGAAAGAAAAGGCCTCTGCCTACATCACCCTCACCTAGGCCTGGCTCTGGTTC
TCCGGACTCCAGGGTGGTGCTTGCCCACCTGCCTCTCGCCCCACCCTGCGCCCCAGTGTGAGGG
GAGAGGGTGACGCCCCGGGGCTGGGCCGCCCGTCCCCTGCCAGTGAGATGCTGGCCTGTCCCCT
GCCAGTGAGATGCTGGCCCTGTGGGTGGGTGGCCCCTGCCCCTCCCCTCCAATCCCTTGGCAAA
TGGGCACCAGGGGCTTCTGCTCCCCTCAAAGCCATACCCCGCCTCTGGGCGGGCACGAGGGGTA
GTGATGCCAGCCAGGGGCATGGACAGAGCCTTTTTCTAAAGAAAAAGACAAAAACTAAAAAAAA
AAAAAAAAGAAAAAAAGGAAAAAGAAAAAAAGAAATTAATATATACGAAGAGTCCTGTGAGGCC
TGGCTGGGTGGAAGGGCACTGCCGAGCGTCCACTGGGCACCCTTCTAGGCCAGCTTCCTGCCTG
GTGCCCCACCCCCACTTCTGGAGTCGCAGCTGTCCCACCTCCCCACCTACGGTGGGCACCGTTC
CCCTTGTGCCCAGGGTGGGTGGGCATGGTGTCCACCCTCGCCCCCTCCTGGTGCCCACCGTGGA
TACTGCATGATGTGAACCATGGTTTTGAACTCTGTTCCTGCCCCTCCCTGACAGCCCCACCCCG
TGCCCACTGGTGCCAGCCGTGCCATAGGCACCGTGGCGCGAGGCGGCCCTACCCAGCGCCCGCT
GGGACGAGAAGCACAGACCTGCAAAGGACTCGTTTTTTTTCCTCCTTCCTGCTGCCCCCCGCCG
ACCCTGCTGGCCATTTTGGGGGCAGCAAGGTGGCGCAGTTGTTTCTTGTGGTTGTGTGTGTTTG
TTGTTCGGGTTTAAAAAAGGGAAATTGAGACTGCAGGTGGGGGTGGGTCTGGGGGTCCCCCCAG
TCCAGGAGAACCCTCCCTGTACCCGAGTCTCCTTCATTGCCTGCCTCTGCTGTGAAATACCTTG
TTCTGTGTATTAAACTGGCCTGACCCCTCTGCCCAC

hide sequence

RefSeq Acc Id:

XM_040279495 ⟹ XP_040135429

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,118 (-)	NCBI

RefSeq Acc Id:

XM_040279496 ⟹ XP_040135430

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,439 (-)	NCBI

RefSeq Acc Id:

XM_040279497 ⟹ XP_040135431

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,439 (-)	NCBI

RefSeq Acc Id:

XM_040279498 ⟹ XP_040135432

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	12,839,485 - 12,848,440 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005340544	(Get FASTA)	NCBI Sequence Viewer
	XP_005340545	(Get FASTA)	NCBI Sequence Viewer
	XP_021575990	(Get FASTA)	NCBI Sequence Viewer
	XP_021575991	(Get FASTA)	NCBI Sequence Viewer
	XP_021575992	(Get FASTA)	NCBI Sequence Viewer
	XP_021575993	(Get FASTA)	NCBI Sequence Viewer
	XP_040135429	(Get FASTA)	NCBI Sequence Viewer
	XP_040135430	(Get FASTA)	NCBI Sequence Viewer
	XP_040135431	(Get FASTA)	NCBI Sequence Viewer
	XP_040135432	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000023088.2
	ENSSTOP00000024238.1
	ENSSTOP00000030492.1
GenBank Protein	KAG3255956	(Get FASTA)	NCBI Sequence Viewer
	KAG3255957	(Get FASTA)	NCBI Sequence Viewer
	KAG3255958	(Get FASTA)	NCBI Sequence Viewer
	KAG3255959	(Get FASTA)	NCBI Sequence Viewer
	KAG3255960	(Get FASTA)	NCBI Sequence Viewer
	KAG3255961	(Get FASTA)	NCBI Sequence Viewer
	KAG3255962	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005340544 ⟸ XM_005340487
- Peptide Label:	isoform X8
- UniProtKB:	A0A287DA99 (UniProtKB/TrEMBL), I3NFE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGGLSARPTAGRTDPPGTCWGQDPGSKMATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLR LPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDC EAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEDDIPRR KNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHAE RHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISC ADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLSP PMAEPPEGSWSCHLCLRHLKEKASAYITLT hide sequence

RefSeq Acc Id:	XP_005340545 ⟸ XM_005340488
- Peptide Label:	isoform X4
- UniProtKB:	I3NFE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGGLSARPTAGRTDPPGTCWGQDPGSKMATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLR LPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDC EAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEDDIPRR KNRAKGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHAE RHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISC ADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCD RGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT hide sequence

RefSeq Acc Id:	XP_021575993 ⟸ XM_021720318
- Peptide Label:	isoform X10
- UniProtKB:	I3NFE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPG LAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEAPLKKEGGLPEGPVLEALLCAETGEK KVELKEEETIMDCQQLLEFPHDLEVEDLEDDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKP YVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHAERHALPFHRKNNHKPKKAPDGTVIPNGYCD FCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQ LLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT hide sequence

RefSeq Acc Id:	XP_021575992 ⟸ XM_021720317
- Peptide Label:	isoform X9
- UniProtKB:	I3NFE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPG LAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEAPLKKEGGLPEGPVLEALLCAETGEK KVELKEEETIMDCQQLLEFPHDLEVEDLEDDIPRRKNRAKGKAYGIGGLRKRQDTASLEDRDKP YVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHAERHALPFHRKNNHKPKKAPDGTVIPNGYCD FCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGA SWAGLTPQDQLLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT hide sequence

RefSeq Acc Id:	XP_021575991 ⟸ XM_021720316
- Peptide Label:	isoform X2
- UniProtKB:	I3NFE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPG LAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEAPLKKEGGLPEGPVLEALLCAETGEK KVELKEEETIMDCQQLLEFPHDLEVEDLEDDIPRRKNRAKGKGSSLSGSLTPDPSPRHMASGVY GNARTPLPWRTETSLCGKRYKNRPGLSYHYTHTHLAEEEGEEHAERHALPFHRKNNHKQFYKEL AWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMT AAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLSPPMAEPPEGS WSCHLCLRHLKEKASAYITLT hide sequence

RefSeq Acc Id:	XP_021575990 ⟸ XM_021720315
- Peptide Label:	isoform X1
- UniProtKB:	I3NFE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPG LAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEAPLKKEGGLPEGPVLEALLCAETGEK KVELKEEETIMDCQKQQLLEFPHDLEVEDLEDDIPRRKNRAKGKGSSLSGSLTPDPSPRHMASG VYGNARTPLPWRTETSLCGKRYKNRPGLSYHYTHTHLAEEEGEEHAERHALPFHRKNNHKQFYK ELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVN MTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLSPPMAEPPE GSWSCHLCLRHLKEKASAYITLT hide sequence

RefSeq Acc Id:	XP_040135432 ⟸ XM_040279498
- Peptide Label:	isoform X7
- UniProtKB:	I3NFE1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040135431 ⟸ XM_040279497
- Peptide Label:	isoform X6
- UniProtKB:	I3NFE1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040135430 ⟸ XM_040279496
- Peptide Label:	isoform X5
- UniProtKB:	I3NFE1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040135429 ⟸ XM_040279495
- Peptide Label:	isoform X3
- UniProtKB:	I3NFE1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000023088 ⟸ ENSSTOT00000027229

RefSeq Acc Id:

ENSSTOP00000030492 ⟸ ENSSTOT00000041740

RefSeq Acc Id:

ENSSTOP00000024238 ⟸ ENSSTOT00000035324

Protein Domains

C2H2-type PHD-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000024515	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000027229.2	UniProtKB/TrEMBL
	ENSSTOT00000035324.1	UniProtKB/TrEMBL
	ENSSTOT00000041740.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Requiem/DPF_N_dom	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
NCBI Gene	Dpf1	ENTREZGENE
PANTHER	HL01030P-RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN UBI-D4	UniProtKB/TrEMBL
Pfam	PHD	UniProtKB/TrEMBL
	Requiem_N	UniProtKB/TrEMBL
PROSITE	ZF_PHD_2	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	PHD	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
	SSF57903	UniProtKB/TrEMBL
UniProt	A0A287CSK0_ICTTR	UniProtKB/TrEMBL
	A0A287DA99	ENTREZGENE, UniProtKB/TrEMBL
	I3NFE1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

RGD Manual Annotations