LOC101967936 (zinc finger protein 566) - Rat Genome Database

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Gene: LOC101967936 (zinc finger protein 566) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101967936 (Ensembl: ZNF566)
Name: zinc finger protein 566
RGD ID: 12678124
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Zfp14; ZFP14 zinc finger protein; Zfp82; ZFP82 zinc finger protein; zinc finger protein 14 homolog; zinc finger protein 420; zinc finger protein 82 homolog; Znf566
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,673,456 - 11,695,871 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936922453,971 - 465,775 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936922443,601 - 532,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000021772   ⟹   ENSSTOP00000015546
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936922453,971 - 465,775 (+)Ensembl
RefSeq Acc Id: XM_021721223   ⟹   XP_021576898
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934911,673,456 - 11,695,871 (+)NCBI
SpeTri2.0NW_004936922443,601 - 465,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021721224   ⟹   XP_021576899
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934911,673,459 - 11,695,871 (+)NCBI
SpeTri2.0NW_004936922443,601 - 465,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040279499   ⟹   XP_040135433
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934911,682,689 - 11,695,871 (+)NCBI
RefSeq Acc Id: XM_040279500   ⟹   XP_040135434
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934911,682,689 - 11,695,871 (+)NCBI
RefSeq Acc Id: XM_040279501   ⟹   XP_040135435
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934911,673,827 - 11,695,871 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021576898 (Get FASTA)   NCBI Sequence Viewer  
  XP_021576899 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135433 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135434 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135435 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015546.1
Reference Protein Sequences
RefSeq Acc Id: XP_021576898   ⟸   XM_021721223
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021576899   ⟸   XM_021721224
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040135435   ⟸   XM_040279501
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040135433   ⟸   XM_040279499
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040135434   ⟸   XM_040279500
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000015546   ⟸   ENSSTOT00000021772
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025003 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021772.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC101967936 ENTREZGENE
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 529 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt I3MTV1_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101967936  zinc finger protein 566  LOC101967936  zinc finger protein 14 homolog  Symbol and/or name change 5135510 APPROVED