Slc66a3 (solute carrier family 66 member 3) - Rat Genome Database

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Gene: Slc66a3 (solute carrier family 66 member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Slc66a3
Name: solute carrier family 66 member 3
RGD ID: 12678047
Description: ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); Liver Neoplasms (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PQ loop repeat containing 3; PQ-loop repeat-containing protein 3; Pqlc3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629252,370,835 - 52,386,778 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365327,127,582 - 7,141,950 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365327,127,656 - 7,141,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
Slc66a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629252,370,835 - 52,386,778 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365327,127,582 - 7,141,950 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365327,127,656 - 7,141,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC66A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38211,155,467 - 11,178,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl211,155,198 - 11,178,870 (+)EnsemblGRCh38hg38GRCh38
GRCh37211,295,593 - 11,318,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36211,212,991 - 11,236,451 (+)NCBINCBI36Build 36hg18NCBI36
Build 34211,246,137 - 11,269,594NCBI
Celera211,211,350 - 11,234,837 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef211,145,269 - 11,168,741 (+)NCBIHuRef
CHM1_1211,225,056 - 11,248,516 (+)NCBICHM1_1
T2T-CHM13v2.0211,187,869 - 11,211,256 (+)NCBIT2T-CHM13v2.0
Slc66a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,038,649 - 17,050,385 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,038,649 - 17,050,409 (-)EnsemblGRCm39 Ensembl
GRCm381216,988,648 - 17,000,386 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1216,988,648 - 17,000,408 (-)EnsemblGRCm38mm10GRCm38
MGSCv371216,995,454 - 17,006,924 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361217,014,128 - 17,025,536 (-)NCBIMGSCv36mm8
Celera1217,311,881 - 17,323,320 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.04NCBI
Slc66a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,503,541 - 45,515,293 (-)NCBIGRCr8
mRatBN7.2639,774,801 - 39,786,554 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl639,774,808 - 39,786,303 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx640,107,352 - 40,118,873 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0640,422,062 - 40,433,583 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0639,855,353 - 39,866,872 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0642,290,678 - 42,302,451 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,290,680 - 42,302,254 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,010,002 - 52,021,578 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4640,676,562 - 40,688,138 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1640,679,514 - 40,691,234 (-)NCBI
Celera639,082,848 - 39,094,377 (-)NCBICelera
Cytogenetic Map6q16NCBI
Slc66a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,848,501 - 5,855,425 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,848,723 - 5,855,425 (+)NCBIChiLan1.0ChiLan1.0
SLC66A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,348,675 - 115,371,081 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,352,646 - 115,375,036 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A11,144,034 - 11,166,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A11,293,960 - 11,315,854 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A11,293,960 - 11,315,854 (+)Ensemblpanpan1.1panPan2
SLC66A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,915,769 - 7,930,463 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,915,696 - 7,929,585 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha177,847,797 - 7,862,441 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0178,018,827 - 8,033,707 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl178,018,812 - 8,033,924 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,903,953 - 7,918,764 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,907,272 - 7,921,929 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,927,344 - 7,942,219 (+)NCBIUU_Cfam_GSD_1.0
SLC66A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3125,494,793 - 125,507,239 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13125,494,793 - 125,507,235 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,207,369 - 134,219,565 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC66A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11496,446,268 - 96,469,485 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1496,447,306 - 96,469,441 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604515,812,667 - 15,834,863 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc66a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248654,592,973 - 4,599,232 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248654,592,697 - 4,599,213 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000022713   ⟹   ENSSTOP00000017489
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365327,127,582 - 7,141,950 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000034944   ⟹   ENSSTOP00000027914
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365327,131,449 - 7,136,389 (+)Ensembl
RefSeq Acc Id: XM_040270907   ⟹   XP_040126841
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629252,370,835 - 52,386,778 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040126841 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017489.2
  ENSSTOP00000027914.1
Reference Protein Sequences
RefSeq Acc Id: XP_040126841   ⟸   XM_040270907
RefSeq Acc Id: ENSSTOP00000027914   ⟸   ENSSTOT00000034944
RefSeq Acc Id: ENSSTOP00000017489   ⟸   ENSSTOT00000022713


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027023 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022713.2 UniProtKB/TrEMBL
  ENSSTOT00000034944.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.290 UniProtKB/TrEMBL
InterPro MannP-dilichol_defect-1 UniProtKB/TrEMBL
NCBI Gene Pqlc3 ENTREZGENE
PANTHER PTHR12226 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 66 MEMBER 3 UniProtKB/TrEMBL
UniProt A0A287D307_ICTTR UniProtKB/TrEMBL
  I3MZE3_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-05-21 Slc66a3  solute carrier family 66 member 3  Pqlc3  PQ loop repeat containing 3  Symbol and/or name change 5135510 APPROVED