Eml2 (EMAP like 2) - Rat Genome Database

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Gene: Eml2 (EMAP like 2) Ictidomys tridecemlineatus
Analyze
Symbol: Eml2
Name: EMAP like 2
RGD ID: 12677881
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); INVOLVED IN microtubule cytoskeleton organization (inferred); negative regulation of microtubule polymerization (inferred); regulation of microtubule nucleation (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoskeleton (inferred); mitotic spindle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: echinoderm microtubule associated protein like 2; echinoderm microtubule-associated protein-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,671,609 - 17,697,347 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367062,018,934 - 2,044,739 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367062,018,951 - 2,044,695 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Eml2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,671,609 - 17,697,347 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367062,018,934 - 2,044,739 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367062,018,951 - 2,044,695 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EML2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,609,400 - 45,645,629 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,606,994 - 45,645,602 (-)EnsemblGRCh38hg38GRCh38
GRCh371946,112,658 - 46,148,887 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,804,498 - 50,834,509 (-)NCBINCBI36Build 36hg18NCBI36
Build 341950,804,499 - 50,834,509NCBI
Celera1942,918,762 - 42,954,890 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,541,781 - 42,577,903 (-)NCBIHuRef
CHM1_11946,115,925 - 46,152,046 (-)NCBICHM1_1
T2T-CHM13v2.01948,436,666 - 48,472,895 (-)NCBIT2T-CHM13v2.0
Eml2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,910,322 - 18,940,407 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,910,346 - 18,940,407 (+)EnsemblGRCm39 Ensembl
GRCm38719,176,421 - 19,206,482 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,176,421 - 19,206,482 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,766,519 - 19,791,831 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,334,943 - 18,365,002 (+)NCBIMGSCv36mm8
Celera716,593,020 - 16,618,880 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.46NCBI
Eml2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,955,924 - 87,987,366 (+)NCBIGRCr8
mRatBN7.2178,827,595 - 78,859,342 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,828,080 - 78,859,341 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,217,266 - 84,248,461 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,774,855 - 92,806,025 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,972,357 - 86,003,550 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,087,684 - 80,118,784 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,087,684 - 80,119,012 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,353,763 - 81,386,605 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,539,321 - 78,570,125 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1178,617,431 - 78,648,236 (+)NCBI
Celera173,293,805 - 73,321,834 (+)NCBICelera
Cytogenetic Map1q21NCBI
Eml2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574106,253 - 135,289 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955574106,788 - 135,289 (-)NCBIChiLan1.0ChiLan1.0
EML2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,770,742 - 51,809,081 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,642,173 - 53,680,529 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,614,590 - 42,652,956 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,155,635 - 51,190,088 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1951,153,241 - 51,191,754 (-)Ensemblpanpan1.1panPan2
EML2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,916,358 - 109,942,344 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,916,766 - 110,054,505 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,401,730 - 109,427,249 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,449,858 - 110,475,420 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,450,037 - 110,587,109 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,125,434 - 110,150,955 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,760,067 - 109,785,560 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,628,943 - 110,654,484 (+)NCBIUU_Cfam_GSD_1.0
EML2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,984,433 - 52,013,393 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,988,084 - 52,013,394 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EML2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,057,327 - 39,092,642 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607318,680,664 - 18,717,938 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eml2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,521,690 - 7,556,229 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248327,521,700 - 7,555,641 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005338229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000013336   ⟹   ENSSTOP00000011951
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367062,018,934 - 2,044,739 (-)Ensembl
RefSeq Acc Id: XM_005338229   ⟹   XP_005338286
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934917,671,609 - 17,697,347 (-)NCBI
SpeTri2.0NW_0049367062,018,951 - 2,044,695 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338286 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011951.3
RefSeq Acc Id: XP_005338286   ⟸   XM_005338229
- UniProtKB: I3MKT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000011951   ⟸   ENSSTOT00000013336
Protein Domains
HELP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013316 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013336.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro HELP UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Eml2 ENTREZGENE
PANTHER PTHR13720:SF50 UniProtKB/TrEMBL
  WD-40 REPEAT PROTEIN UniProtKB/TrEMBL
Pfam HELP UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  TolB, C-terminal domain UniProtKB/TrEMBL
UniProt I3MKT3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-29 Eml2  EMAP like 2    echinoderm microtubule associated protein like 2  Symbol and/or name change 5135510 APPROVED