Echs1 (enoyl-CoA hydratase, short chain 1) - Rat Genome Database

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Gene: Echs1 (enoyl-CoA hydratase, short chain 1) Ictidomys tridecemlineatus
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Symbol: Echs1
Name: enoyl-CoA hydratase, short chain 1
RGD ID: 12677844
Description: ENCODES a protein that exhibits enoyl-CoA hydratase activity (ortholog); INVOLVED IN fatty acid beta-oxidation (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyacyl-CoA dehydrogenase deficiency pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); Leigh disease (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: enoyl-CoA hydratase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,064,697 - 6,072,679 (+)NCBI
SpeTri2.0NW_00493648619,488,619 - 19,496,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Echs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,064,697 - 6,072,679 (+)NCBI
SpeTri2.0NW_00493648619,488,619 - 19,496,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ECHS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10133,362,485 - 133,373,354 (-)EnsemblGRCh38hg38GRCh38
GRCh3810133,362,480 - 133,373,396 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710135,175,989 - 135,186,858 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610135,025,980 - 135,036,898 (-)NCBINCBI36hg18NCBI36
Build 3410135,064,870 - 135,075,789NCBI
Celera10128,330,716 - 128,341,541 (+)NCBI
Cytogenetic Map10q26.3NCBI
HuRef10128,720,102 - 128,735,596 (-)NCBIHuRef
CHM1_110135,457,879 - 135,468,770 (-)NCBICHM1_1
Echs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397139,685,623 - 139,696,334 (-)NCBIGRCm39mm39
GRCm39 Ensembl7139,685,623 - 139,696,389 (-)Ensembl
GRCm387140,105,710 - 140,116,421 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,105,710 - 140,116,476 (-)EnsemblGRCm38mm10GRCm38
MGSCv377147,291,622 - 147,302,322 (-)NCBIGRCm37mm9NCBIm37
MGSCv367139,957,043 - 139,967,743 (-)NCBImm8
Celera7139,903,786 - 139,914,486 (-)NCBICelera
Cytogenetic Map7F4NCBI
Echs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21194,895,036 - 194,903,863 (-)NCBI
Rnor_6.0 Ensembl1212,570,195 - 212,579,057 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,821,916 - 141,830,764 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01212,570,213 - 212,579,040 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01219,484,862 - 219,493,689 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41199,901,585 - 199,910,412 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11200,051,577 - 200,060,404 (-)NCBI
Celera1192,572,098 - 192,580,925 (-)NCBICelera
Cytogenetic Map1q41NCBI
Echs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547711,012,451 - 11,021,486 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547711,012,451 - 11,021,487 (-)NCBIChiLan1.0ChiLan1.0
ECHS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110134,278,388 - 134,289,308 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10134,278,388 - 134,289,308 (-)Ensemblpanpan1.1panPan2
ECHS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,939,856 - 40,947,694 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,939,961 - 40,946,167 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,994,970 - 41,002,785 (-)NCBI
ROS_Cfam_1.02841,574,846 - 41,582,544 (-)NCBI
UMICH_Zoey_3.12841,058,933 - 41,067,149 (-)NCBI
UNSW_CanFamBas_1.02841,048,529 - 41,056,202 (-)NCBI
UU_Cfam_GSD_1.02841,451,431 - 41,459,252 (-)NCBI
ECHS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14141,335,990 - 141,349,030 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114141,340,320 - 141,348,870 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ECHS1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12653,212,299 - 53,222,805 (-)NCBI
Echs1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473713,329,052 - 13,338,358 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005320789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005320789   ⟹   XP_005320846
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244072136,064,697 - 6,072,679 (+)NCBI
SpeTri2.0NW_00493648619,488,619 - 19,496,583 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320846 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005320846   ⟸   XM_005320789
- UniProtKB: I3MMH6 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014223 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000012738 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014222 UniProtKB/TrEMBL
Gene3D-CATH 1.10.12.10 UniProtKB/TrEMBL
InterPro ClpP/crotonase-like_dom_sf UniProtKB/TrEMBL
  Crontonase_C UniProtKB/TrEMBL
  Crotonase_core_superfam UniProtKB/TrEMBL
  Enoyl-CoA_hyd/isom_CS UniProtKB/TrEMBL
NCBI Gene Echs1 ENTREZGENE
Pfam ECH_1 UniProtKB/TrEMBL
PROSITE ENOYL_COA_HYDRATASE UniProtKB/TrEMBL
Superfamily-SCOP SSF52096 UniProtKB/TrEMBL
UniProt I3MMH6 ENTREZGENE, UniProtKB/TrEMBL