Pnpla3 (patatin like phospholipase domain containing 3) - Rat Genome Database

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Gene: Pnpla3 (patatin like phospholipase domain containing 3) Ictidomys tridecemlineatus
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Symbol: Pnpla3
Name: patatin like phospholipase domain containing 3
RGD ID: 12677206
Description: ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (ortholog); diolein transacylation activity (ortholog); long-chain fatty acyl-CoA binding (ortholog); INVOLVED IN cellular response to 3,3',5-triiodo-L-thyronine (ortholog); cellular response to insulin stimulus (ortholog); glycerophospholipid metabolic process (ortholog); ASSOCIATED WITH alcoholic liver cirrhosis (ortholog); Alcoholic Liver Diseases (ortholog); coronary artery disease (ortholog); FOUND IN lipid droplet (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: 1-acylglycerol-3-phosphate O-acyltransferase PNPLA3; patatin like phospholipase domain containing 3, transcript variant X1; patatin like phospholipase domain containing 3, transcript variant X2; patatin-like phospholipase domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049455,341,850 - 5,360,187 (-)NCBI
SpeTri2.0NW_0049367181,620,034 - 1,638,315 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Pnpla3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049455,341,850 - 5,360,187 (-)NCBI
SpeTri2.0NW_0049367181,620,034 - 1,638,315 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNPLA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2243,923,792 - 43,964,488 (+)EnsemblGRCh38hg38GRCh38
GRCh382243,923,805 - 43,947,582 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372244,319,685 - 44,343,462 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362242,650,952 - 42,674,781 (+)NCBINCBI36hg18NCBI36
Celera2228,230,136 - 28,255,047 (+)NCBI
Cytogenetic Map22q13.31NCBI
HuRef2227,273,880 - 27,298,036 (+)NCBIHuRef
CHM1_12244,278,349 - 44,302,177 (+)NCBICHM1_1
Pnpla3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391584,051,977 - 84,073,722 (+)NCBIGRCm39mm39
GRCm39 Ensembl1584,052,038 - 84,071,437 (+)Ensembl
GRCm381584,167,776 - 84,189,521 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1584,167,837 - 84,187,236 (+)EnsemblGRCm38mm10GRCm38
MGSCv371583,998,246 - 84,019,951 (+)NCBIGRCm37mm9NCBIm37
MGSCv361583,995,603 - 84,017,280 (+)NCBImm8
Celera1586,298,497 - 86,320,441 (+)NCBICelera
Cytogenetic Map15E2NCBI
Pnpla3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27115,293,538 - 115,314,077 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7115,293,538 - 115,314,077 (+)Ensembl
Rnor_6.07125,034,760 - 125,056,165 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7125,034,764 - 125,055,976 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07125,023,278 - 125,044,677 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47122,152,092 - 122,171,994 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7111,599,483 - 111,620,054 (+)NCBICelera
Cytogenetic Map7q34NCBI
Pnpla3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541328,879,748 - 28,893,938 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541328,879,646 - 28,896,224 (+)NCBIChiLan1.0ChiLan1.0
PNPLA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12243,004,329 - 43,027,749 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2243,004,499 - 43,027,003 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02224,812,831 - 24,836,161 (+)NCBIMhudiblu_PPA_v0panPan3
PNPLA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11021,708,439 - 21,722,282 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1021,712,378 - 21,722,135 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1021,647,779 - 21,663,038 (-)NCBI
ROS_Cfam_1.01022,455,884 - 22,471,128 (-)NCBI
UMICH_Zoey_3.11022,175,366 - 22,190,635 (-)NCBI
UNSW_CanFamBas_1.01022,495,689 - 22,510,929 (-)NCBI
UU_Cfam_GSD_1.01022,669,488 - 22,684,748 (-)NCBI
PNPLA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl55,075,622 - 5,092,515 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.155,075,608 - 5,092,599 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PNPLA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11926,435,302 - 26,458,368 (+)NCBI
ChlSab1.1 Ensembl1926,435,599 - 26,462,210 (+)Ensembl
Vero_WHO_p1.0NW_02366604598,945,667 - 98,969,751 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005338586   ⟹   XP_005338643
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049455,341,850 - 5,360,187 (-)NCBI
SpeTri2.0NW_0049367181,620,034 - 1,638,315 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735468   ⟹   XP_021591143
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049367181,620,034 - 1,635,925 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005730391
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049455,343,320 - 5,360,187 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005338643 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3290772 (Get FASTA)   NCBI Sequence Viewer  
  KAG3290773 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005338643   ⟸   XM_005338586
- UniProtKB: I3MM73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021591143   ⟸   XM_021735468
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014059 ENTREZGENE
Ensembl Protein ENSSTOP00000012596 ENTREZGENE
NCBI Gene Pnpla3 ENTREZGENE
UniProt I3MM73 ENTREZGENE