Zbtb34 (zinc finger and BTB domain containing 34) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Zbtb34 (zinc finger and BTB domain containing 34) Ictidomys tridecemlineatus
Analyze
Symbol: Zbtb34
Name: zinc finger and BTB domain containing 34
RGD ID: 12677086
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain containing 34, transcript variant X1; zinc finger and BTB domain containing 34, transcript variant X2; zinc finger and BTB domain containing 34, transcript variant X3; zinc finger and BTB domain containing 34, transcript variant X4; zinc finger and BTB domain containing 34, transcript variant X5; zinc finger and BTB domain-containing protein 34
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947194,949,656 - 194,974,295 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648714,720,349 - 14,742,849 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648714,718,217 - 14,742,822 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbtb34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947194,949,656 - 194,974,295 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648714,720,349 - 14,742,849 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648714,718,217 - 14,742,822 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389126,860,639 - 126,885,878 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9126,860,639 - 126,885,878 (+)EnsemblGRCh38hg38GRCh38
GRCh379129,622,918 - 129,648,157 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369128,662,765 - 128,687,978 (+)NCBINCBI36Build 36hg18NCBI36
Build 349126,702,497 - 126,727,691NCBI
Celera9100,275,414 - 100,302,734 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef999,236,108 - 99,263,309 (+)NCBIHuRef
CHM1_19129,773,657 - 129,798,849 (+)NCBICHM1_1
T2T-CHM13v2.09139,066,368 - 139,092,302 (+)NCBIT2T-CHM13v2.0
Zbtb34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39233,296,121 - 33,321,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl233,296,120 - 33,321,336 (-)EnsemblGRCm39 Ensembl
GRCm38233,406,108 - 33,431,324 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl233,406,108 - 33,431,324 (-)EnsemblGRCm38mm10GRCm38
MGSCv37233,261,628 - 33,286,844 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36233,228,118 - 33,253,333 (-)NCBIMGSCv36mm8
Celera233,113,252 - 33,135,304 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.44NCBI
Zbtb34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8337,101,033 - 37,123,758 (-)NCBIGRCr8
mRatBN7.2316,703,355 - 16,726,082 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,703,262 - 16,726,098 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx319,771,426 - 19,794,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0328,356,442 - 28,379,100 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0326,607,434 - 26,630,091 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0312,452,705 - 12,468,487 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl312,448,281 - 12,467,662 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0317,785,394 - 17,803,232 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4312,417,253 - 12,419,015 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera311,441,170 - 11,461,628 (-)NCBICelera
Cytogenetic Map3p11NCBI
Zbtb34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554191,615,987 - 1,638,282 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554191,608,348 - 1,645,561 (-)NCBIChiLan1.0ChiLan1.0
ZBTB34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21112,470,575 - 12,495,801 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1912,472,921 - 12,498,147 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0997,979,000 - 98,004,219 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19126,636,369 - 126,658,567 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9126,652,091 - 126,653,605 (+)Ensemblpanpan1.1panPan2
ZBTB34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1956,395,948 - 56,399,592 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha955,597,383 - 55,621,321 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0957,316,164 - 57,340,157 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl957,311,909 - 57,385,626 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1956,075,276 - 56,099,330 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0956,390,509 - 56,414,830 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0956,481,881 - 56,505,877 (-)NCBIUU_Cfam_GSD_1.0
ZBTB34
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1267,436,990 - 267,465,619 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11267,436,988 - 267,465,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZBTB34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11211,251,706 - 11,272,414 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1211,252,192 - 11,270,297 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660794,943,675 - 4,968,899 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247608,531,354 - 8,568,197 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247608,526,876 - 8,552,022 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000009093   ⟹   ENSSTOP00000008153
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648714,720,349 - 14,742,849 (+)Ensembl
RefSeq Acc Id: XM_013356770   ⟹   XP_013212224
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947194,949,656 - 194,974,295 (+)NCBI
SpeTri2.0NW_00493648714,718,217 - 14,742,822 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013356771   ⟹   XP_013212225
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947194,949,657 - 194,974,295 (+)NCBI
SpeTri2.0NW_00493648714,718,217 - 14,742,822 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021723553   ⟹   XP_021579228
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947194,949,657 - 194,974,295 (+)NCBI
SpeTri2.0NW_00493648714,718,217 - 14,742,822 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040286337   ⟹   XP_040142271
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947194,963,941 - 194,974,295 (+)NCBI
RefSeq Acc Id: XM_040286338   ⟹   XP_040142272
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947194,963,941 - 194,974,295 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013212224   ⟸   XM_013356770
- Peptide Label: isoform X1
- UniProtKB: I3MCX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212225   ⟸   XM_013356771
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021579228   ⟸   XM_021723553
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040142271   ⟸   XM_040286337
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040142272   ⟸   XM_040286338
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000008153   ⟸   ENSSTOT00000009093
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009103 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009093.3 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zbtb34 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN CONTAINING 34 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt I3MCX6 ENTREZGENE, UniProtKB/TrEMBL