Ltbp1 (latent transforming growth factor beta binding protein 1) - Rat Genome Database

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Gene: Ltbp1 (latent transforming growth factor beta binding protein 1) Ictidomys tridecemlineatus
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Symbol: Ltbp1
Name: latent transforming growth factor beta binding protein 1
RGD ID: 12675905
Description: ENCODES a protein that exhibits microfibril binding (ortholog); transforming growth factor beta binding (ortholog); INVOLVED IN aorta development (ortholog); cellular response to mechanical stimulus (ortholog); cellular response to parathyroid hormone stimulus (ortholog); ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Experimental Liver Cirrhosis (ortholog); glomerulonephritis (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); cytoplasm (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: latent-transforming growth factor beta-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629270,199,425 - 70,586,169 (+)NCBI
SpeTri2.0NW_004936493253,390 - 640,140 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Ltbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629270,199,425 - 70,586,169 (+)NCBI
SpeTri2.0NW_004936493253,390 - 640,140 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LTBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl232,946,953 - 33,399,509 (+)EnsemblGRCh38hg38GRCh38
GRCh38232,902,129 - 33,399,509 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37233,172,020 - 33,624,576 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36233,025,896 - 33,478,080 (+)NCBINCBI36hg18NCBI36
Build 34233,084,042 - 33,536,224NCBI
Celera233,011,085 - 33,463,289 (+)NCBI
Cytogenetic Map2p22.3NCBI
HuRef232,905,956 - 33,358,305 (+)NCBIHuRef
CHM1_1233,101,861 - 33,553,940 (+)NCBICHM1_1
Ltbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391775,312,475 - 75,699,507 (+)NCBIGRCm39mm39
GRCm39 Ensembl1775,312,563 - 75,699,507 (+)Ensembl
GRCm381775,005,480 - 75,392,512 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1775,005,568 - 75,392,512 (+)EnsemblGRCm38mm10GRCm38
MGSCv371775,404,869 - 75,791,109 (+)NCBIGRCm37mm9NCBIm37
MGSCv361774,910,589 - 75,296,829 (+)NCBImm8
Celera1779,300,183 - 79,689,321 (+)NCBICelera
Cytogenetic Map17E2NCBI
Ltbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2620,029,629 - 20,425,339 (-)NCBI
Rnor_6.0 Ensembl621,203,502 - 21,600,451 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0621,203,502 - 21,600,441 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0631,097,090 - 31,491,815 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4619,942,626 - 20,355,084 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1620,157,811 - 20,358,038 (-)NCBI
Celera619,596,894 - 19,988,483 (-)NCBICelera
Cytogenetic Map6q13NCBI
Ltbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554411,232,041 - 1,627,470 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554411,405,340 - 1,626,668 (+)NCBIChiLan1.0ChiLan1.0
LTBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A33,854,604 - 34,120,593 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A33,667,191 - 34,120,602 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A32,956,937 - 33,409,286 (+)NCBIMhudiblu_PPA_v0panPan3
LTBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11726,129,528 - 26,521,782 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1726,130,781 - 26,521,779 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1725,920,743 - 26,311,820 (+)NCBI
ROS_Cfam_1.01726,696,150 - 27,088,547 (+)NCBI
UMICH_Zoey_3.11725,992,669 - 26,384,315 (+)NCBI
UNSW_CanFamBas_1.01726,065,391 - 26,457,908 (+)NCBI
UU_Cfam_GSD_1.01726,223,816 - 26,614,580 (+)NCBI
LTBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3106,300,750 - 106,724,934 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13106,300,748 - 106,724,538 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23113,356,459 - 113,442,576 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LTBP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11474,063,258 - 74,441,042 (-)NCBI
ChlSab1.1 Ensembl1474,064,087 - 74,548,825 (-)Ensembl
Ltbp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473814,602,790 - 15,035,610 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013357346   ⟹   XP_013212800
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936493253,390 - 640,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040270914   ⟹   XP_040126848
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629270,199,425 - 70,586,169 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040126848 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013212800   ⟸   XM_013357346
- Sequence:
RefSeq Acc Id: XP_040126848   ⟸   XM_040270914
Protein Domains
EGF-like   TB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011543 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000010399 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011585 UniProtKB/TrEMBL
Gene3D-CATH 3.90.290.10 UniProtKB/TrEMBL
InterPro cEGF UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  TB_dom UniProtKB/TrEMBL
  TB_dom_sf UniProtKB/TrEMBL
NCBI Gene Ltbp1 ENTREZGENE
Pfam cEGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  PF00683 UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  PS51364 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP SSF57184 UniProtKB/TrEMBL
  SSF57581 UniProtKB/TrEMBL
UniProt I3MHM1_ICTTR UniProtKB/TrEMBL