Ndufaf1 (NADH:ubiquinone oxidoreductase complex assembly factor 1) - Rat Genome Database

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Gene: Ndufaf1 (NADH:ubiquinone oxidoreductase complex assembly factor 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ndufaf1
Name: NADH:ubiquinone oxidoreductase complex assembly factor 1
RGD ID: 12674501
Description: ENCODES a protein that exhibits unfolded protein binding (inferred); INVOLVED IN chaperone-mediated protein complex assembly (inferred); mitochondrial electron transport, NADH to ubiquinone (inferred); mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN cytosol (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: complex I intermediate-associated protein 30, mitochondrial; NADH:ubiquinone oxidoreductase complex assembly factor 1, transcript variant X1; NADH:ubiquinone oxidoreductase complex assembly factor 1, transcript variant X2; NADH:ubiquinone oxidoreductase complex assembly factor 1, transcript variant X3; NADH:ubiquinone oxidoreductase complex assembly factor 1, transcript variant X4; NADH:ubiquinone oxidoreductase complex assembly factor 1, transcript variant X5; NADH:ubiquinone oxidoreductase complex assembly factor 1, transcript variant X6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,885,642 - 86,902,398 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,731,578 - 4,750,444 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,733,707 - 4,750,390 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ndufaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,885,642 - 86,902,398 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,731,578 - 4,750,444 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,733,707 - 4,750,390 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,387,353 - 41,403,026 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,387,218 - 41,409,403 (-)EnsemblGRCh38hg38GRCh38
GRCh371541,679,551 - 41,694,694 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,466,843 - 39,481,934 (-)NCBINCBI36Build 36hg18NCBI36
Build 341539,466,844 - 39,481,934NCBI
Celera1518,447,525 - 18,462,613 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1518,529,139 - 18,543,176 (-)NCBIHuRef
CHM1_11541,797,711 - 41,812,772 (-)NCBICHM1_1
T2T-CHM13v2.01539,193,517 - 39,209,187 (-)NCBIT2T-CHM13v2.0
Ndufaf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,485,927 - 119,493,302 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,485,927 - 119,493,308 (-)EnsemblGRCm39 Ensembl
GRCm382119,655,446 - 119,662,839 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,655,446 - 119,662,827 (-)EnsemblGRCm38mm10GRCm38
MGSCv372119,481,187 - 119,488,534 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,346,892 - 119,354,239 (-)NCBIMGSCv36mm8
Celera2120,812,304 - 120,820,803 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.97NCBI
Ndufaf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,089,893 - 127,104,357 (-)NCBIGRCr8
mRatBN7.23106,639,025 - 106,650,549 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,639,851 - 106,650,212 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,315,169 - 110,325,523 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,910,716 - 118,921,070 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,571,103 - 116,581,457 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,458,227 - 111,469,239 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,458,572 - 111,469,518 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,006,728 - 118,017,733 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,171,381 - 106,181,742 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13106,067,806 - 106,073,092 (-)NCBI
Celera3105,551,097 - 105,561,458 (-)NCBICelera
Cytogenetic Map3q35NCBI
Ndufaf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,210,410 - 8,217,138 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,210,198 - 8,222,986 (-)NCBIChiLan1.0ChiLan1.0
NDUFAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21630,626,581 - 30,642,448 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11534,777,815 - 34,794,168 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01520,326,486 - 20,341,156 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11538,569,731 - 38,583,968 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,569,731 - 38,583,872 (-)Ensemblpanpan1.1panPan2
NDUFAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,436,301 - 8,452,239 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,423,315 - 8,452,113 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,495,600 - 8,511,492 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0308,570,687 - 8,586,811 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl308,570,687 - 8,586,735 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,492,335 - 8,508,242 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,599,938 - 8,615,803 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,730,896 - 8,747,017 (-)NCBIUU_Cfam_GSD_1.0
NDUFAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1129,968,502 - 130,009,391 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11129,968,480 - 129,993,534 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,130,829 - 145,136,685 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,598,979 - 41,620,883 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2641,598,977 - 41,622,438 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604899,355,648 - 99,369,595 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufaf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,533,456 - 8,560,521 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248048,532,281 - 8,560,396 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000008329   ⟹   ENSSTOP00000007465
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364714,731,578 - 4,750,444 (-)Ensembl
RefSeq Acc Id: XM_005316434   ⟹   XP_005316491
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864086,885,642 - 86,902,343 (-)NCBI
SpeTri2.0NW_0049364714,733,707 - 4,750,378 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360091   ⟹   XP_013215545
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864086,885,642 - 86,902,398 (-)NCBI
SpeTri2.0NW_0049364714,733,707 - 4,750,390 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360094   ⟹   XP_013215548
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864086,885,642 - 86,902,180 (-)NCBI
SpeTri2.0NW_0049364714,733,707 - 4,750,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725885   ⟹   XP_021581560
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864086,885,642 - 86,902,180 (-)NCBI
SpeTri2.0NW_0049364714,733,707 - 4,750,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725888   ⟹   XP_021581563
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864086,885,642 - 86,902,343 (-)NCBI
SpeTri2.0NW_0049364714,733,707 - 4,750,383 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013215548   ⟸   XM_013360094
- Peptide Label: isoform X1
- UniProtKB: I3MBF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013215545   ⟸   XM_013360091
- Peptide Label: isoform X1
- UniProtKB: I3MBF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005316491   ⟸   XM_005316434
- Peptide Label: isoform X1
- UniProtKB: I3MBF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581563   ⟸   XM_021725888
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021581560   ⟸   XM_021725885
- Peptide Label: isoform X1
- UniProtKB: I3MBF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000007465   ⟸   ENSSTOT00000008329
Protein Domains
NADH:ubiquinone oxidoreductase intermediate-


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008333 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008329.3 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding lectin UniProtKB/TrEMBL
InterPro Galactose-bd-like_sf UniProtKB/TrEMBL
  NADH-UbQ_OxRdtase-assoc_prot30 UniProtKB/TrEMBL
  NDUFAF1 UniProtKB/TrEMBL
NCBI Gene Ndufaf1 ENTREZGENE
PANTHER COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR13194 UniProtKB/TrEMBL
Pfam CIA30 UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/TrEMBL
UniProt I3MBF7 ENTREZGENE, UniProtKB/TrEMBL