Cpt2 (carnitine palmitoyltransferase 2) - Rat Genome Database

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Gene: Cpt2 (carnitine palmitoyltransferase 2) Ictidomys tridecemlineatus
Analyze
Symbol: Cpt2
Name: carnitine palmitoyltransferase 2
RGD ID: 12673792
Description: ENCODES a protein that exhibits acyltransferase activity (ortholog); carnitine O-palmitoyltransferase activity (ortholog); INVOLVED IN carnitine metabolic process (ortholog); fatty acid beta-oxidation (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine palmitoyltransferase I deficiency pathway; carnitine-acylcarnitine translocase deficiency; ASSOCIATED WITH brain disease (ortholog); carnitine palmitoyltransferase II deficiency (ortholog); Carnitine Palmitoyltransferase II Deficiency, Infantile (ortholog); FOUND IN mitochondrion (ortholog); nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: carnitine O-palmitoyltransferase 2, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505867,540,611 - 67,558,122 (+)NCBI
SpeTri2.0NW_0049365227,858,172 - 7,875,679 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Cpt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505867,540,611 - 67,558,122 (+)NCBI
SpeTri2.0NW_0049365227,858,172 - 7,875,679 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl153,196,792 - 53,214,197 (+)EnsemblGRCh38hg38GRCh38
GRCh38153,196,824 - 53,214,197 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37153,662,496 - 53,679,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36153,434,689 - 53,452,455 (+)NCBINCBI36hg18NCBI36
Build 34153,374,121 - 53,391,888NCBI
Celera151,949,941 - 51,967,712 (+)NCBI
Cytogenetic Map1p32.3NCBI
HuRef151,777,752 - 51,795,523 (+)NCBIHuRef
CHM1_1153,779,095 - 53,796,864 (+)NCBICHM1_1
Cpt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394107,761,179 - 107,780,786 (-)NCBIGRCm39mm39
GRCm39 Ensembl4107,761,178 - 107,780,807 (-)Ensembl
GRCm384107,903,982 - 107,923,589 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4107,903,981 - 107,923,610 (-)EnsemblGRCm38mm10GRCm38
MGSCv374107,576,587 - 107,596,194 (-)NCBIGRCm37mm9NCBIm37
MGSCv364107,401,914 - 107,421,466 (-)NCBImm8
Celera4106,252,864 - 106,272,513 (-)NCBICelera
Cytogenetic Map4C7NCBI
cM Map450.18NCBI
Cpt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25122,664,677 - 122,682,126 (-)NCBI
Rnor_6.0 Ensembl5127,505,614 - 127,523,089 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05127,505,646 - 127,523,016 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05131,353,542 - 131,370,821 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45129,007,685 - 129,025,501 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15129,012,910 - 129,030,727 (-)NCBI
Celera5121,406,314 - 121,423,718 (-)NCBICelera
Cytogenetic Map5q34NCBI
Cpt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554645,942,986 - 5,970,345 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554645,942,986 - 5,970,325 (-)NCBIChiLan1.0ChiLan1.0
CPT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1154,069,334 - 54,086,994 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl154,069,334 - 54,086,994 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0152,469,416 - 52,487,166 (+)NCBIMhudiblu_PPA_v0panPan3
CPT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1555,718,209 - 55,786,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl555,718,510 - 55,744,809 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha555,784,409 - 55,811,033 (-)NCBI
ROS_Cfam_1.0555,907,324 - 55,933,944 (-)NCBI
UMICH_Zoey_3.1555,899,940 - 55,926,541 (-)NCBI
UNSW_CanFamBas_1.0555,791,152 - 55,817,745 (-)NCBI
UU_Cfam_GSD_1.0556,180,213 - 56,206,825 (-)NCBI
CPT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6159,036,821 - 159,061,327 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16159,038,129 - 159,061,327 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26146,702,081 - 146,774,794 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPT2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12079,710,638 - 79,728,100 (-)NCBI
ChlSab1.1 Ensembl2079,706,584 - 79,727,689 (-)Ensembl
Cpt2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249341,239,849 - 1,271,993 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013358943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013358943   ⟹   XP_013214397
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505867,540,611 - 67,558,122 (+)NCBI
SpeTri2.0NW_0049365227,858,172 - 7,875,679 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013214397 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013214397   ⟸   XM_013358943
- Sequence:
Protein Domains
Carn_acyltransf


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016415 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014694 UniProtKB/TrEMBL
  ENSSTOP00000028700 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016418 UniProtKB/TrEMBL
  ENSSTOT00000041214 UniProtKB/TrEMBL
Gene3D-CATH 3.30.559.40 UniProtKB/TrEMBL
  3.30.559.70 UniProtKB/TrEMBL
InterPro Carn_acyl_trans UniProtKB/TrEMBL
  Cho/carn_acyl_trans UniProtKB/TrEMBL
  Cho/carn_acyl_trans_1 UniProtKB/TrEMBL
  Cho/carn_acyl_trans_2 UniProtKB/TrEMBL
NCBI Gene Cpt2 ENTREZGENE
PANTHER PTHR22589 UniProtKB/TrEMBL
Pfam Carn_acyltransf UniProtKB/TrEMBL
PROSITE ACYLTRANSF_C_1 UniProtKB/TrEMBL
  ACYLTRANSF_C_2 UniProtKB/TrEMBL
UniProt A0A287D5B1_ICTTR UniProtKB/TrEMBL
  I3MRH6_ICTTR UniProtKB/TrEMBL