Lrrc32 (leucine rich repeat containing 32) - Rat Genome Database

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Gene: Lrrc32 (leucine rich repeat containing 32) Ictidomys tridecemlineatus
Analyze
Symbol: Lrrc32
Name: leucine rich repeat containing 32
RGD ID: 12673634
Description: ENCODES a protein that exhibits transforming growth factor beta binding (ortholog); INVOLVED IN negative regulation of activated T cell proliferation (ortholog); negative regulation of cytokine production (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH Cleft Palate, Proliferative Retinopathy, and Developmental Delay (ortholog); Developmental Disabilities (ortholog); intellectual disability (ortholog); FOUND IN cell surface (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: leucine-rich repeat-containing protein 32; transforming growth factor beta activator LRRC32
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494763,706,129 - 63,716,750 (-)NCBI
SpeTri2.0NW_0049364985,305,680 - 5,315,580 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Lrrc32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494763,706,129 - 63,716,750 (-)NCBI
SpeTri2.0NW_0049364985,305,680 - 5,315,580 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC32
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1176,657,524 - 76,670,747 (-)EnsemblGRCh38hg38GRCh38
GRCh381176,657,524 - 76,670,747 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371176,368,568 - 76,381,791 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361176,046,222 - 76,058,543 (-)NCBINCBI36hg18NCBI36
Build 341176,046,222 - 76,058,543NCBI
Celera1173,676,360 - 73,689,583 (-)NCBI
Cytogenetic Map11q13.5NCBI
HuRef1172,666,014 - 72,679,237 (-)NCBIHuRef
CHM1_11176,252,093 - 76,265,313 (-)NCBICHM1_1
Lrrc32
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39798,138,515 - 98,151,038 (+)NCBIGRCm39mm39
GRCm39 Ensembl798,138,490 - 98,151,388 (+)Ensembl
GRCm38798,489,305 - 98,501,831 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,489,283 - 98,502,181 (+)EnsemblGRCm38mm10GRCm38
MGSCv377105,642,732 - 105,650,341 (+)NCBIGRCm37mm9NCBIm37
MGSCv36788,242,266 - 88,245,111 (+)NCBImm8
MGSCv36798,369,414 - 98,375,198 (+)NCBImm8
Celera798,817,398 - 98,825,017 (+)NCBICelera
Cytogenetic Map7E1NCBI
cM Map753.86NCBI
Lrrc32
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21152,785,709 - 152,802,997 (+)NCBI
Rnor_6.0 Ensembl1163,445,527 - 163,457,424 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01163,443,972 - 163,457,426 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01169,648,351 - 169,661,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41155,760,527 - 155,771,294 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11155,838,894 - 155,849,700 (+)NCBI
Celera1150,875,833 - 150,887,643 (+)NCBICelera
Cytogenetic Map1q32NCBI
Lrrc32
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541415,296,563 - 15,309,088 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541415,296,704 - 15,309,088 (+)NCBIChiLan1.0ChiLan1.0
LRRC32
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11175,354,997 - 75,368,187 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1175,354,997 - 75,367,440 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01171,708,222 - 71,721,426 (-)NCBIMhudiblu_PPA_v0panPan3
LRRC32
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12122,051,140 - 22,059,714 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2122,051,920 - 22,057,632 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2121,875,962 - 21,895,388 (+)NCBI
ROS_Cfam_1.02122,249,186 - 22,268,633 (+)NCBI
UMICH_Zoey_3.12122,024,459 - 22,043,872 (+)NCBI
UNSW_CanFamBas_1.02122,243,899 - 22,263,312 (+)NCBI
UU_Cfam_GSD_1.02122,163,062 - 22,182,511 (+)NCBI
LRRC32
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl910,801,946 - 10,817,930 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1910,802,228 - 10,815,892 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2911,913,105 - 11,926,575 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC32
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,866,072 - 67,879,177 (-)NCBI
ChlSab1.1 Ensembl167,864,609 - 67,879,160 (-)Ensembl
Vero_WHO_p1.0NW_02366604357,909,760 - 57,923,072 (+)NCBI
Lrrc32
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624817497,415 - 510,061 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005323224   ⟹   XP_005323281
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494763,706,129 - 63,713,204 (-)NCBI
SpeTri2.0NW_0049364985,305,680 - 5,312,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725117   ⟹   XP_021580792
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494763,706,129 - 63,716,750 (-)NCBI
SpeTri2.0NW_0049364985,305,680 - 5,315,580 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040284974   ⟹   XP_040140908
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494763,706,129 - 63,716,750 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005323281 (Get FASTA)   NCBI Sequence Viewer  
  XP_021580792 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140908 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005323281   ⟸   XM_005323224
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021580792   ⟸   XM_021725117
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040140908   ⟸   XM_040284974
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007128 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000020910 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007120 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene Lrrc32 ENTREZGENE
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
UniProt I3N964_ICTTR UniProtKB/TrEMBL