Tst (thiosulfate sulfurtransferase) - Rat Genome Database

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Gene: Tst (thiosulfate sulfurtransferase) Ictidomys tridecemlineatus
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Symbol: Tst
Name: thiosulfate sulfurtransferase
RGD ID: 12673053
Description: ENCODES a protein that exhibits 5S rRNA binding (inferred); sulfurtransferase activity (inferred); thiosulfate sulfurtransferase activity (inferred); INVOLVED IN epithelial cell differentiation (inferred); rRNA import into mitochondrion (inferred); rRNA transport (inferred); ASSOCIATED WITH autosomal recessive chronic granulomatous disease cytochrome b-positive type III (ortholog); colitis (ortholog); hepatocellular carcinoma (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,870,086 - 10,876,466 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364923,880,545 - 3,886,881 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Tst
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,870,086 - 10,876,466 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364923,880,545 - 3,886,881 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TST
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,010,859 - 37,020,183 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2237,010,859 - 37,020,183 (-)EnsemblGRCh38hg38GRCh38
GRCh372237,406,900 - 37,416,224 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,736,852 - 35,745,437 (-)NCBINCBI36Build 36hg18NCBI36
Build 342235,731,406 - 35,739,991NCBI
Celera2221,208,242 - 21,216,827 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,372,028 - 20,390,853 (-)NCBIHuRef
CHM1_12237,366,379 - 37,375,716 (-)NCBICHM1_1
T2T-CHM13v2.02237,470,450 - 37,479,782 (-)NCBIT2T-CHM13v2.0
Tst
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,283,756 - 78,290,065 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,283,756 - 78,290,107 (-)EnsemblGRCm39 Ensembl
GRCm381578,399,556 - 78,405,865 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,399,556 - 78,405,907 (-)EnsemblGRCm38mm10GRCm38
MGSCv371578,229,986 - 78,236,289 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,226,811 - 78,233,117 (-)NCBIMGSCv36mm8
Celera1579,862,256 - 79,868,553 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.47NCBI
Tst
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27109,948,061 - 109,955,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,948,062 - 109,957,216 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,697,709 - 111,704,460 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07113,921,242 - 113,927,993 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07113,889,944 - 113,896,691 (-)NCBIRnor_WKY
Rnor_6.07119,616,323 - 119,623,072 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,616,324 - 119,623,072 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,606,998 - 119,613,747 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,349,579 - 116,355,921 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17116,383,866 - 116,390,114 (-)NCBI
Celera7106,286,095 - 106,292,845 (-)NCBICelera
Cytogenetic Map7q34NCBI
Tst
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,528,417 - 23,534,979 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,528,468 - 23,534,890 (-)NCBIChiLan1.0ChiLan1.0
TST
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12235,761,073 - 35,769,651 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,761,073 - 35,768,992 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02217,925,215 - 17,933,919 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TST
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,474,101 - 27,486,603 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,473,764 - 27,486,575 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,427,965 - 27,441,111 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,265,478 - 28,278,615 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,266,267 - 28,278,613 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,987,062 - 28,000,182 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,295,640 - 28,308,756 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,473,581 - 28,486,734 (+)NCBIUU_Cfam_GSD_1.0
TST
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,746,890 - 10,759,622 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,749,264 - 10,759,623 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,348,614 - 8,358,974 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TST
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,716,295 - 19,724,712 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,716,180 - 19,724,589 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,137,782 - 106,146,330 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tst
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,765,137 - 10,774,800 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475210,765,126 - 10,772,159 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005322287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005322287   ⟹   XP_005322344
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494510,870,086 - 10,876,466 (+)NCBI
SpeTri2.0NW_0049364923,880,545 - 3,886,881 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005322344 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3291010 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005322344   ⟸   XM_005322287
- UniProtKB: I3NG42 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Rhodanese


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021415 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000023339 ENTREZGENE
  ENSSTOP00000023339.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019937.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.250.10 UniProtKB/TrEMBL
InterPro Rhodanese-like_dom UniProtKB/TrEMBL
  Rhodanese-like_dom_sf UniProtKB/TrEMBL
  Thiosulphate_STrfase_CS UniProtKB/TrEMBL
  TST/MPST-like UniProtKB/TrEMBL
NCBI Gene Tst ENTREZGENE
PANTHER PTHR11364 UniProtKB/TrEMBL
Pfam Rhodanese UniProtKB/TrEMBL
PROSITE RHODANESE_1 UniProtKB/TrEMBL
  RHODANESE_2 UniProtKB/TrEMBL
  RHODANESE_3 UniProtKB/TrEMBL
SMART RHOD UniProtKB/TrEMBL
Superfamily-SCOP SSF52821 UniProtKB/TrEMBL
UniProt I3NG42 ENTREZGENE, UniProtKB/TrEMBL