LOC101966280 (sodium/potassium-transporting ATPase subunit alpha-4) - Rat Genome Database

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Gene: LOC101966280 (sodium/potassium-transporting ATPase subunit alpha-4) Ictidomys tridecemlineatus
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Symbol: LOC101966280 (Ensembl: ATP1A4)
Name: sodium/potassium-transporting ATPase subunit alpha-4 (Ensembl:ATPase Na+/K+ transporting subunit alpha 4)
RGD ID: 12671134
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATPase-coupled monoatomic cation transmembrane transporter activity (inferred); INVOLVED IN establishment of localization in cell (ortholog); fertilization (ortholog); flagellated sperm motility (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; alfentanil pharmacodynamics pathway; ASSOCIATED WITH anthracosis (ortholog); autism spectrum disorder (ortholog); autoimmune interstitial lung, joint, and kidney disease (ortholog); FOUND IN cell projection (inferred); membrane (inferred); photoreceptor cell cilium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Atp1a4; ATPase Na+/K+ transporting subunit alpha 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,275,960 - 6,308,838 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740445,952 - 478,532 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936740445,952 - 478,580 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
alfentanil pharmacodynamics pathway  (ISO)
amiloride pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
bendroflumethiazide pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bumetanide pharmacodynamics pathway  (ISO)
bupivacaine pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
buprenorphine pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
chloroprocaine pharmacodynamics pathway  (ISO)
chlorothiazide pharmacodynamics pathway  (ISO)
chlorthalidone pharmacodynamics pathway  (ISO)
citalopram pharmacodynamics pathway  (ISO)
cocaine pharmacodynamics pathway  (ISO)
codeine and morphine pharmacodynamics pathway  (ISO)
cystinuria pathway  (ISO)
desipramine pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
diphenoxylate pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
eplerenone pharmacodynamics pathway  (ISO)
escitalopram pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
etacrynic acid pharmacodynamics pathway  (ISO)
ethylmorphine pharmacodynamics pathway  (ISO)
fentanyl pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fluoxetine pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
furosemide pharmacodynamics pathway  (ISO)
Hartnup disease pathway  (ISO)
heroin pharmacodynamics pathway  (ISO)
hydrochlorothiazide pharmacodynamics pathway  (ISO)
hydrocodone pharmacodynamics pathway  (ISO)
hydroflumethiazide pharmacodynamics pathway  (ISO)
hydromorphone pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
iminoglycinuria pathway  (ISO)
imipramine pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
lactose degradation pathway  (ISO)
levacetylmethadol pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
levobupivacaine phgarmacodynamics pathway  (ISO)
levorphanol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
lysinuric protein intolerance pathway  (ISO)
mepivacaine pharmacodynamics pathway  (ISO)
methadone pharmacodynamics pathway  (ISO)
metolazone pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nalbuphine pharmacodynamics pathway  (ISO)
naloxone pharmacodynamics pathway  (ISO)
naltrexone pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nicotine pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
oxybuprocaine pharmacodynamics pathway  (ISO)
oxycodone pharmacodynamics pathway  (ISO)
oxymorphone pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
pentazocine pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
prilocaine pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
procaine pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
remifentanil pharmacodynamics pathway  (ISO)
ropivacaine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
spironolactone pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
torasemide pharmacodynamics pathway  (ISO)
tramadol pharmacodynamics pathway  (ISO)
trehalose degradation pathway  (ISO)
triamterene pharmacodynamics pathway  (ISO)
trichlormethiazide pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101966280
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,275,960 - 6,308,838 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740445,952 - 478,532 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936740445,952 - 478,580 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP1A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,151,603 - 160,186,980 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,151,586 - 160,186,980 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,121,393 - 160,156,770 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,387,976 - 158,423,391 (+)NCBINCBI36Build 36hg18NCBI36
Build 341156,934,435 - 156,969,836NCBI
Celera1133,190,120 - 133,225,532 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1131,478,471 - 131,513,484 (+)NCBIHuRef
CHM1_11161,516,689 - 161,552,120 (+)NCBICHM1_1
T2T-CHM13v2.01159,288,690 - 159,324,059 (+)NCBIT2T-CHM13v2.0
Atp1a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,051,075 - 172,085,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,051,080 - 172,085,981 (-)EnsemblGRCm39 Ensembl
GRCm381172,223,508 - 172,258,424 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,223,513 - 172,258,414 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,153,639 - 174,188,555 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1175,079,480 - 175,114,351 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.54NCBI
Atp1a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,216,139 - 87,252,155 (-)NCBIGRCr8
mRatBN7.21384,683,766 - 84,719,790 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,683,768 - 84,719,687 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1387,187,089 - 87,223,004 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,587,350 - 88,623,276 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,772,091 - 85,807,950 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,605,792 - 90,642,032 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,605,794 - 90,641,772 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01395,126,899 - 95,163,433 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41388,213,848 - 88,249,075 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11388,402,731 - 88,437,959 (-)NCBI
Celera1384,295,133 - 84,329,808 (-)NCBICelera
Cytogenetic Map13q24NCBI
ATP1A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,663,062 - 89,701,813 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,403,023 - 89,441,794 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,504,929 - 135,540,651 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,426,556 - 139,462,393 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,426,556 - 139,462,393 (+)Ensemblpanpan1.1panPan2
ATP1A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,759,509 - 3,794,106 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,759,597 - 3,793,980 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660382,816,977 - 2,852,218 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp1a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247941,068,056 - 1,108,303 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000007527   ⟹   ENSSTOP00000006727
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936740445,952 - 478,532 (-)Ensembl
RefSeq Acc Id: XM_013364793   ⟹   XP_013220247
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050586,275,960 - 6,308,838 (+)NCBI
SpeTri2.0NW_004936740445,952 - 478,580 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287268   ⟹   XP_040143202
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050586,281,415 - 6,308,838 (+)NCBI
RefSeq Acc Id: XM_040287269   ⟹   XP_040143203
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050586,287,755 - 6,308,838 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013220247 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143202 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143203 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006727.3
GenBank Protein KAG3281050 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013220247   ⟸   XM_013364793
- Peptide Label: isoform X1
- UniProtKB: I3M9X2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143202   ⟸   XM_040287268
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040143203   ⟸   XM_040287269
- Peptide Label: isoform X3
Ensembl Acc Id: ENSSTOP00000006727   ⟸   ENSSTOT00000007527

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007516 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007527.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_cation-transptr_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  Cation_transp_ATPase_P-type UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IIC UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene Atp1a4 ENTREZGENE
PANTHER SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA UniProtKB/TrEMBL
  SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA-4 UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  Cation_ATPase_C UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  Hydrolase UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
  NAKATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt I3M9X2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101966280  sodium/potassium-transporting ATPase subunit alpha-4  Atp1a4  ATPase Na+/K+ transporting subunit alpha 4  Symbol and/or name change 5135510 APPROVED