Plce1 (phospholipase C epsilon 1) - Rat Genome Database

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Gene: Plce1 (phospholipase C epsilon 1) Ictidomys tridecemlineatus
Analyze
Symbol: Plce1
Name: phospholipase C epsilon 1
RGD ID: 12670039
Description: ENCODES a protein that exhibits phosphatidylinositol phospholipase C activity (ortholog); small GTPase binding (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); Ras protein signal transduction (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); benign familial hematuria (ortholog); dengue hemorrhagic fever (ortholog); FOUND IN cytosol (inferred); lamellipodium (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1; phospholipase C epsilon 1, transcript variant X1; phospholipase C epsilon 1, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721339,184,543 - 39,473,227 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936601816,190 - 1,105,830 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936601817,151 - 1,105,824 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Plce1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721339,184,543 - 39,473,227 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936601816,190 - 1,105,830 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936601817,151 - 1,105,824 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLCE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381093,993,931 - 94,332,823 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1093,993,931 - 94,332,823 (+)EnsemblGRCh38hg38GRCh38
GRCh371095,753,688 - 96,092,580 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361095,743,736 - 96,078,139 (+)NCBINCBI36Build 36hg18NCBI36
Celera1089,493,881 - 89,828,255 (+)NCBICelera
Cytogenetic Map10q23.33NCBI
HuRef1089,417,740 - 89,714,892 (+)NCBIHuRef
CHM1_11096,072,191 - 96,370,190 (+)NCBICHM1_1
T2T-CHM13v2.01094,872,907 - 95,211,918 (+)NCBIT2T-CHM13v2.0
Plce1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391938,469,438 - 38,773,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1938,469,557 - 38,773,474 (+)EnsemblGRCm39 Ensembl
GRCm381938,481,034 - 38,785,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1938,481,109 - 38,785,030 (+)EnsemblGRCm38mm10GRCm38
MGSCv371938,598,687 - 38,859,595 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361938,589,341 - 38,848,444 (+)NCBIMGSCv36mm8
Celera1939,314,226 - 39,575,892 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1933.16NCBI
Plce1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81245,655,855 - 245,964,966 (+)NCBIGRCr8
mRatBN7.21236,243,445 - 236,552,571 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1236,244,683 - 236,551,438 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,666,928 - 244,974,895 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01251,561,834 - 251,868,600 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,400,107 - 244,706,858 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01257,156,023 - 257,465,440 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1257,157,264 - 257,466,064 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01264,652,842 - 264,956,664 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,794,858 - 243,103,437 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,891,416 - 243,199,995 (+)NCBI
Celera1233,337,820 - 233,642,815 (+)NCBICelera
Cytogenetic Map1q53NCBI
Plce1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955507555,499 - 825,568 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955507555,570 - 825,568 (+)NCBIChiLan1.0ChiLan1.0
PLCE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28106,023,546 - 106,361,193 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110106,028,877 - 106,363,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01090,731,695 - 91,065,846 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11094,336,542 - 94,575,024 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1094,278,550 - 94,575,024 (+)Ensemblpanpan1.1panPan2
PLCE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1288,209,707 - 8,484,427 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl288,210,058 - 8,481,770 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha288,387,216 - 8,659,466 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0288,429,089 - 8,751,544 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl288,428,039 - 8,748,665 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1288,190,819 - 8,462,238 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0288,220,652 - 8,493,537 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0288,391,272 - 8,663,966 (+)NCBIUU_Cfam_GSD_1.0
PLCE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14105,458,916 - 105,764,737 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114105,422,628 - 105,764,736 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214115,378,315 - 115,615,665 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLCE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1987,214,166 - 87,559,010 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl987,214,355 - 87,555,733 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604847,996,373 - 48,343,637 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plce1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247375,343,570 - 5,695,284 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247375,309,157 - 5,699,384 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000014169   ⟹   ENSSTOP00000012694
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936601816,190 - 1,105,830 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000019693   ⟹   ENSSTOP00000015661
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936601821,367 - 1,072,732 (-)Ensembl
RefSeq Acc Id: XM_013362156   ⟹   XP_013217610
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721339,184,543 - 39,473,227 (-)NCBI
SpeTri2.0NW_004936601817,151 - 1,072,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040272123   ⟹   XP_040128057
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721339,184,543 - 39,473,227 (-)NCBI
RefSeq Acc Id: XM_040272124   ⟹   XP_040128058
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721339,184,543 - 39,473,227 (-)NCBI
RefSeq Acc Id: XM_040272125   ⟹   XP_040128059
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721339,184,543 - 39,473,227 (-)NCBI
RefSeq Acc Id: XP_013217610   ⟸   XM_013362156
- Peptide Label: isoform X4
- UniProtKB: I3MME3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040128058   ⟸   XM_040272124
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040128059   ⟸   XM_040272125
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040128057   ⟸   XM_040272123
- Peptide Label: isoform X1
- UniProtKB: I3MU66 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000015661   ⟸   ENSSTOT00000019693
RefSeq Acc Id: ENSSTOP00000012694   ⟸   ENSSTOT00000014169
Protein Domains
C2   PI-PLC Y-box   Ras-associating   Ras-GEF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014154 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014169.3 UniProtKB/TrEMBL
  ENSSTOT00000019693.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.840.10 UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/TrEMBL
  3.20.20.190 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  PI-PLC_fam UniProtKB/TrEMBL
  PLC-epsilon1 UniProtKB/TrEMBL
  PLC-epsilon1_cat UniProtKB/TrEMBL
  PLC-like_Pdiesterase_TIM-brl UniProtKB/TrEMBL
  PLC_EF-hand-like UniProtKB/TrEMBL
  PLC_epsilon1_EF UniProtKB/TrEMBL
  PLipase_C_PInositol-sp_X_dom UniProtKB/TrEMBL
  PLipase_C_Pinositol-sp_Y UniProtKB/TrEMBL
  RA_dom UniProtKB/TrEMBL
  Ras_GEF_dom_sf UniProtKB/TrEMBL
  RASGEF_cat_dom UniProtKB/TrEMBL
  RASGEF_cat_dom_sf UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Plce1 ENTREZGENE
PANTHER PTHR10336 UniProtKB/TrEMBL
  PTHR10336:SF6 UniProtKB/TrEMBL
Pfam EF-hand_like UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
  PF00788 UniProtKB/TrEMBL
  PI-PLC-X UniProtKB/TrEMBL
  PI-PLC-Y UniProtKB/TrEMBL
  RasGEF UniProtKB/TrEMBL
PRINTS PHPHLIPASEC UniProtKB/TrEMBL
PROSITE PIPLC_X_DOMAIN UniProtKB/TrEMBL
  PIPLC_Y_DOMAIN UniProtKB/TrEMBL
  PS50004 UniProtKB/TrEMBL
  PS50200 UniProtKB/TrEMBL
  RASGEF_CAT UniProtKB/TrEMBL
SMART PLCXc UniProtKB/TrEMBL
  PLCYc UniProtKB/TrEMBL
  RasGEF UniProtKB/TrEMBL
  SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
  SSF48366 UniProtKB/TrEMBL
  SSF49562 UniProtKB/TrEMBL
  SSF51695 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt I3MME3 ENTREZGENE, UniProtKB/TrEMBL
  I3MU66 ENTREZGENE, UniProtKB/TrEMBL