Ncln (nicalin) - Rat Genome Database

Name: Ncln
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ncln (nicalin) Ictidomys tridecemlineatus

Analyze

Symbol:

Ncln

Name:

nicalin

RGD ID:

12669741

Description:

ENCODES a protein that exhibits ribosome binding (inferred); INVOLVED IN multi-pass transmembrane protein insertion into ER membrane (inferred); protein stabilization (inferred); regulation of protein complex stability (inferred); ASSOCIATED WITH genetic disease (ortholog); Hirschsprung's disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NCLN (nicalin)	NCBI	Ortholog
Mus musculus (house mouse):	Ncln (nicalin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ncln (nicalin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ncln (nicalin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NCLN (nicalin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NCLN (nicalin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NCLN (nicalin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NCLN (nicalin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ncln (nicalin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	215,994,392 - 216,008,251 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	1,826,045 - 1,840,411 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	1,826,065 - 1,840,391 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Hirschsprung's disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

multi-pass transmembrane protein insertion into ER membrane (IEA)

protein stabilization (IEA)

regulation of protein complex stability (IEA)

regulation of protein-containing complex assembly (IEA)

regulation of signal transduction (IEA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA,ISO)

membrane (IEA)

multi-pass translocon complex (IEA)

protein-containing complex (IEA)

Molecular Function

protein binding (ISO)

ribosome binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Ncln
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	215,994,392 - 216,008,251 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	1,826,045 - 1,840,411 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	1,826,065 - 1,840,391 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NCLN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	3,185,930 - 3,209,575 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	3,185,563 - 3,209,575 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	3,185,928 - 3,209,573 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	3,136,875 - 3,160,573 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	3,136,874 - 3,160,572	NCBI
Celera	19	3,122,250 - 3,145,978 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	2,952,961 - 2,976,782 (+)	NCBI		HuRef
CHM1_1	19	3,184,524 - 3,208,222 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	3,160,750 - 3,184,441 (+)	NCBI		T2T-CHM13v2.0

Ncln
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	81,322,289 - 81,333,178 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	81,322,083 - 81,332,226 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	81,486,455 - 81,496,954 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	81,486,249 - 81,496,392 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	80,949,204 - 80,959,108 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	80,889,378 - 80,899,485 (-)	NCBI		MGSCv36	mm8
Celera	10	82,509,842 - 82,519,746 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Ncln
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	8,862,324 - 8,872,699 (+)	NCBI		GRCr8
mRatBN7.2	7	8,211,978 - 8,221,938 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,211,996 - 8,221,934 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,098,042 - 11,107,974 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	12,973,525 - 12,983,457 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	10,840,645 - 10,850,578 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,081,544 - 11,091,583 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,081,536 - 11,091,584 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	11,248,733 - 11,258,772 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	9,695,951 - 9,705,989 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	9,695,950 - 9,705,988 (+)	NCBI
Celera	7	6,402,537 - 6,412,474 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

Ncln
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	5,222,808 - 5,238,643 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	5,222,990 - 5,238,644 (-)	NCBI	ChiLan1.0	ChiLan1.0

NCLN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	7,581,716 - 7,605,672 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	6,815,021 - 6,838,924 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	2,211,474 - 2,235,691 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	3,166,042 - 3,189,681 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	3,166,042 - 3,189,681 (+)	Ensembl	panpan1.1		panPan2

NCLN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	56,088,017 - 56,104,723 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	56,088,017 - 56,104,723 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	55,811,878 - 55,828,580 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	56,746,690 - 56,763,396 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	56,745,969 - 56,763,411 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	55,802,155 - 55,818,810 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	56,286,144 - 56,302,913 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	56,484,881 - 56,501,641 (-)	NCBI		UU_Cfam_GSD_1.0

NCLN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	75,369,955 - 75,390,545 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	75,369,926 - 75,390,609 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	75,891,204 - 75,909,206 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NCLN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	2,948,723 - 2,975,465 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	2,948,212 - 2,975,596 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	5,608,300 - 5,633,124 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ncln
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	6,018,439 - 6,035,446 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	6,018,438 - 6,035,310 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005332014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000024044 ⟹ ENSSTOP00000017005

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936588	1,826,045 - 1,840,411 (+)	Ensembl

RefSeq Acc Id:

XM_005332014 ⟹ XP_005332071

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	215,994,392 - 216,008,251 (-)	NCBI
SpeTri2.0	NW_004936588	1,826,065 - 1,840,391 (+)	NCBI

Sequence:

show sequence

GGGAATTTTAAATTTTATTCCCGCGCCCCAGAAACTACAGTTCCCATGACCCTTTGAGCTCGTG
CGAAGGGACCACGACACCCAGGAGGACCAGCGCGCCAGAGAGGCACTTCCTCCTCCAGCTCTTC
CCCCCGCATTTCCTTCCAGGTCGCAAGGTCACGCCCTGACCGCGTCTCTTATCTCCCCGCTCCG
CGCCCCTACCCCAGCCAAGGCCAGGGTCTAAGCAAGTTCCACTGGAGAATGGCTGCCCAAAGCT
AGGTCGTTCCCGACTTGGGATTCATGTGAAATTCCGGTAGCGTTAGCGAAACAACCCCTCAGGG
CTTCCGTCGGGAGTCCGCGGTGGGCCTACAACTCCCAGGCGGCTCCGCGCGCCCTGGCGGACTA
CAGCTCCCGAGAGGCAGCGCGCGCAAGGCTGCCCGCGGCGATGCGTGCAGGACCCCGGTGCGGA
CGCGGGCTGCCCGACGCGTTGCCCGCAGGACCCCGGCGGCTGCCCATGCCGAGGTGAGTCCGCG
GGAGCCGCGGCCGCCGTCCCGTCGTCTCGTCCCGTCCCGTCCCGTCCCCGCCGCCGCCCCGCGC
GGACCCGCCGCTGGCCAGGATGCTGGAGGAAGCGGGCGAGGTGCTGGAGAACATGCTGAAGGCG
TCGTGCCTGCCGCTCGGCTTCATCGTCTTCTTGCCCGCGGTGCTGCTGCTCGTGGCGCCGCCGC
TGCCCGCCGCCGACGCCGCGCACGAGTTCACGGTGTACCGCATGCAGCAGTACGACCTGCAGGG
CCAGCCCTACGGCACCCGGAACGCGGTGCTCAACACAGAGGCACGCACAATGGACGCGGACGTG
CTGAGCCGGCGCTGCGTGCTCATGCGGCTGGCGGACTTCTCCTACGAGCAGTACCAGAAGGCCC
TGCGGCAGTCGGCAGGGGCCGTGGTCATCATCCTGCCGCGGGCCATGGCCGCTGTTCCCCAGGA
CGTCGTGCGGCAATTCATGGAGATCGAGCCTGAGATGCTGGCCATGGAGACCATCGTCCCCGTG
TACTTTGCCGTGGAGGATGAGGCCCTGCTGTCCATCTACGAGCAGACCCAGGCCGCCTCCGCCT
CCCAGGGCTCTGCCTCTGCCGCCGAAGTGCTGCTCCACACGGCCACTGCCAATGGCTTCCAGAT
GGTCACCAGTGGGGTCCAGAGCAAGGCCGTGAGCGACTGGCTCATCACTAGCGTGGAGGGGCGG
CTGACGGGGCTGGGAGGAGAGGACCTGCCCACCATCGTCATCGTGGCTCACTACGACGCCTTCG
GGGTGGCCCCTTGGCTGTCGCTGGGCGCGGACTCCAACGGGAGTGGCGTCTCGGTGCTGCTGGA
GCTGGCCCGGCTCTTCTCCAGACTCTACACCTACAAGCGCACCCATGCGGCGTACAACCTCCTG
TTCTTTGCTTCTGGAGGAGGCAAGTTTAACTACCAGGGCACCAAGCGCTGGCTGGAGGACAACC
TGGACCACACAGACTCCAGCCTGCTCCAGGACAACGTGGCCTTCGTCCTGTGCCTGGACACCGT
GGGCCGGGGCAGCAGCCTGCACCTGCACGTGTCCAGGCCGCCCCGGGAGGGGACCCTGCAGCAT
GCCTTCCTGCGGGAGCTGGAAACGGTAGCCGCCCACCAGTTCCCCGAGGTGCGGTTCTCCATGG
TGCACAAGAAGATCAACCTGGCTGACGACGTGCTGGCCTGGGAGCACGAGCGCTTTGCCATCCG
CCGGCTGCCCGCCTTCACCCTGTCCCACCTGGAGAGCCACCGTGACGGCCAGCGCAGCAGCATC
ATGGACGTGCGGTCCCGGGTGGACTCGAAGACCCTGACACGAAACACGAGGATCATCGCGGAGG
CCCTGACGCGGGTCATATACAACCTGACAGAGAAGGGCACCCCGCCAGACATGCCCGTGTTCAC
CGAGCAGATGCAGGTCCAGCAGGAGCAGCTGGACTCGGTGATGGACTGGCTCACCAACCAGCCG
CGGGCCGCACAGCTGCTGGACAAGGACGGCACCTTCCTGAGCACGCTGGAGCACTTCCTGAGCC
GCTACCTGAAGGACGTGCGGCAGCACCACGTGAAGGCCGACAAGCGGGACCCCGAGTTCGTCTT
CTATGACCAGCTGAAGCAGGTGATGAACGCCTACAGGGTCAAGCCGGCTATCTTCGACCTGCTC
CTGGCCGTCTGCATCGGCGCCTACCTCGGGATGGCCTACACGGCAGTCCAGCACTTTGACCTCC
TCTACAAGACCGTGCAGAGGCTACTGGTAAAGGCCAAGACACCGTGACCCAGCCACCCACCCGC
GCCCACCACGCAGGAAGGACAGCACCCCTGGCCGTTGACACTGAATTACAGTTTCCGAGCCGCT
CTCCAGGCCTGGGGCGTCTTTCTTTCTCTTTGCCGTGGACTCCCCCGGAGGAGGGCGCGGAGCC
GGCTGGGGCCAGGCCTCGGATGCGGGAGCCAGCGTGGACGAGCCCCAGCCCGGGGCCTGCCCAG
CACACGCACCTTACGGAGGAAGCCCAGCTGCAGAGCTGGGGTCAGGCCCGATCCTGACCTTGGC
AGCTGGCTGTCCTGGACGCCCCTGGACGCCCGGGTCTCCTCTCCACCCTGCTGCTGACCTGGGT
GTGGTGACACTTCTCCCTCCTCCTACTTGCTGGCTGCAGCCTCTAGGTCTCAGGATTTGGCCAT
TTGTGGCCTCCCCTGCCCACCGCTCCACGACACCCCCTGGCCACCAGGTGGACAGAGCAAGCAG
ATGGGGCTGGTGCTGAGCCCGCCCCCAGGTGGCCACTCCCGCCACGCCGGCGGGTCACTAGCTG
GTTGCTGCCCCTCTGCCTGCTGGCCCTGAGCCGAGTCTCCACACCCTGCAGCTCCAGGCCCGGC
TCCCTGCTGCGCCCTGGGCCCTGCCCTGCACCCCCAGCCAGTCCCTAGCGCTTCCTGTTCCCAC
ATGCCCCACGGCTCCCGCAGGCCGCCTGTCCCTTGAGCTCACCCGCCCCGGGCTCCTCACGCCT
CTGTCCATCTGGGAAAGAGACAGTGTGGGGAGCCGCCCTCTGTCCCAGGAGGGAGGTCTGGAGA
GGGGTTGTGCCCTGGGCCACTCCTGGGACCCTGACCCGGAGGAACTGTGCAGGGCAGTGCCCTC
AGGGAGGCCCGCCTGCCCCTTCCTTAGCAATACGACCAGTGTGTTCTCCCAGGGCATCGGCTGC
AGAGACCTGGCCGGTCAGGCTCCAGGGGCGTCGTGGTTCGGGGCTGGCCCACCACAGCTGTCCG
GCCCACCTGGCTCGCTGGGTTCCAGCAGTTGGTTTTGTAGCCGTGCTTCTGTCCCAGACAGCCG
CTGGCAGCCCCCTCCAGACCCTGTCTGGAAGGACAAGGCCACCTTCCATCGCCTGCCCAGTCAG
GAGCCCAAGGCCAGCACAGGAGACTGCCCCAGCCCAGGCTACTCTGGCACACGTGCGCTGGTGT
CCACTTGCTGGCCCAAGGCAGTGCCTCCTGTCCCGTGAAAGGGCTTGGGACCTGCTGCCCACTC
CTCTGGGTGTCTGCTGCCCTGCAGGCATCTGGGCCACCTCCTGCCTGCCTCCTGGGGAGGTGAC
CCACTGACCACCCGGGGCTCGGTGGTGGGATGCAATAGCCCCGGGTGGGAAATAAAGCCATATT
GAATGAA

hide sequence

RefSeq Acc Id:

XM_021730869 ⟹ XP_021586544

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	215,994,392 - 216,008,123 (-)	NCBI
SpeTri2.0	NW_004936588	1,826,065 - 1,840,391 (+)	NCBI

Sequence:

show sequence

GGGAATTTTAAATTTTATTCCCGCGCCCCAGAAACTACAGTTCCCATGACCCTTTGAGCTCGTG
CGAAGGGACCACGACACCCAGGAGGACCAGCGCGCCAGAGAGGCACTTCCTCCTCCAGCTCTTC
CCCCCGCATTTCCTTCCAGGTCGCAAGGTCACGCCCTGACCGCGTCTCTTATCTCCCCGCTCCG
CGCCCCTACCCCAGCCAAGGCCAGGGTCTAAGCAAGTTCCACTGGAGAATGGCTGCCCAAAGCT
AGGTCGTTCCCGACTTGGGATTCATGTGAAATTCCGGTAGCGTTAGCGAAACAACCCCTCAGGG
CTTCCGTCGGGAGTCCGCGGTGGGCCTACAACTCCCAGGCGGCTCCGCGCGCCCTGGCGGACTA
CAGCTCCCGAGAGGCAGCGCGCGCAAGGCTGCCCGCGGCGATGCGTGCAGGACCCCGGTGCGGA
CGCGGGCTGCCCGACGCGTTGCCCGCAGGACCCCGGCGGCTGCCCATGCCGAGGTGAGTCCGCG
GGAGCCGCGGCCGCCGTCCCGTCGTCTCGTCCCGTCCCGTCCCGTCCCCGCCGCCGCCCCGCGC
GGACCCGCCGCTGGCCAGGATGCTGGAGGAAGCGGGCGAGGTGCTGGAGAACATGCTGAAGGCG
TCGTGCCTGCCGCTCGGCTTCATCGTCTTCTTGCCCGCGGTGCTGCTGCTCGTGGCGCCGCCGC
TGCCCGCCGCCGACGCCGCGCACGAGTTCACGGTGTACCGCATGCAGCAGTACGACCTGCAGGG
CCAGCCCTACGGCACCCGGAACGCGGTGCTCAACACAGAGGCACGCACAATGGACGCGGACGTG
CTGAGCCGGCGCTGCGTGCTCATGCGGCTGGCGGACTTCTCCTACGAGCAGTACCAGAAGGCCC
TGCGGCAGTCGGCAGGGGCCGTGGTCATCATCCTGCCGCGGGCCATGGCCGCTGTTCCCCAGGA
CGTCGTGCGGCAATTCATGGAGATCGAGCCTGAGATGCTGGCCATGGAGACCATCGTCCCCGTG
TACTTTGCCGTGGAGGATGAGGCCCTGCTGTCCATCTACGAGCAGACCCAGGCCGCCTCCGCCT
CCCAGGGCTCTGCCTCTGCCGCCGAAGTGCTGCTCCACACGGCCACTGCCAATGGCTTCCAGAT
GGTCACCAGTGGGGTCCAGAGCAAGGCCGTGAGCGACTGGCTCATCACTAGCGTGGAGGGGCGG
CTGACGGGGCTGGGAGGAGAGGACCTGCCCACCATCGTCATCGTGGCTCACTACGACGCCTTCG
GGGTGGCCCCTTGGCTGTCGCTGGGCGCGGACTCCAACGGGAGTGGCGTCTCGGTGCTGCTGGA
GCTGGCCCGGCTCTTCTCCAGACTCTACACCTACAAGCGCACCCATGCGGCGTACAACCTCCTG
TTCTTTGCTTCTGGAGGAGGCAAGTTTAACTACCAGGGCACCAAGCGCTGGCTGGAGGACAACC
TGGACCACACAGACTCCAGCCTGCTCCAGGACAACGTGGCCTTCGTCCTGTGCCTGGACACCGT
GGGCCGGGGCAGCAGCCTGCACCTGCACGTGTCCAGGCCGCCCCGGGAGGGGACCCTGCAGCAT
GCCTTCCTGCGGGAGCTGGAAACGGTAGCCGCCCACCAGTTCCCCGAGGTGCGGTTCTCCATGG
TGCACAAGAAGATCAACCTGGCTGACGACGTGCTGGCCTGGGAGCACGAGCGCTTTGCCATCCG
CCGGCTGCCCGCCTTCACCCTGTCCCACCTGGAGAGCCACCGTGACGGCCAGCGCAGCAGCATC
ATGGACGTGCGGTCCCGGGTGGACTCGAAGACCCTGACACGAAACACGAGGATCATCGCGGAGG
CCCTGACGCGGGTCATATACAACCTGACAGAGAAGGGCACCCCGCCAGACATGCCCGTGTTCAC
CGAGCAGATGGTCCAGCAGGAGCAGCTGGACTCGGTGATGGACTGGCTCACCAACCAGCCGCGG
GCCGCACAGCTGCTGGACAAGGACGGCACCTTCCTGAGCACGCTGGAGCACTTCCTGAGCCGCT
ACCTGAAGGACGTGCGGCAGCACCACGTGAAGGCCGACAAGCGGGACCCCGAGTTCGTCTTCTA
TGACCAGCTGAAGCAGGTGATGAACGCCTACAGGGTCAAGCCGGCTATCTTCGACCTGCTCCTG
GCCGTCTGCATCGGCGCCTACCTCGGGATGGCCTACACGGCAGTCCAGCACTTTGACCTCCTCT
ACAAGACCGTGCAGAGGCTACTGGTAAAGGCCAAGACACCGTGACCCAGCCACCCACCCGCGCC
CACCACGCAGGAAGGACAGCACCCCTGGCCGTTGACACTGAATTACAGTTTCCGAGCCGCTCTC
CAGGCCTGGGGCGTCTTTCTTTCTCTTTGCCGTGGACTCCCCCGGAGGAGGGCGCGGAGCCGGC
TGGGGCCAGGCCTCGGATGCGGGAGCCAGCGTGGACGAGCCCCAGCCCGGGGCCTGCCCAGCAC
ACGCACCTTACGGAGGAAGCCCAGCTGCAGAGCTGGGGTCAGGCCCGATCCTGACCTTGGCAGC
TGGCTGTCCTGGACGCCCCTGGACGCCCGGGTCTCCTCTCCACCCTGCTGCTGACCTGGGTGTG
GTGACACTTCTCCCTCCTCCTACTTGCTGGCTGCAGCCTCTAGGTCTCAGGATTTGGCCATTTG
TGGCCTCCCCTGCCCACCGCTCCACGACACCCCCTGGCCACCAGGTGGACAGAGCAAGCAGATG
GGGCTGGTGCTGAGCCCGCCCCCAGGTGGCCACTCCCGCCACGCCGGCGGGTCACTAGCTGGTT
GCTGCCCCTCTGCCTGCTGGCCCTGAGCCGAGTCTCCACACCCTGCAGCTCCAGGCCCGGCTCC
CTGCTGCGCCCTGGGCCCTGCCCTGCACCCCCAGCCAGTCCCTAGCGCTTCCTGTTCCCACATG
CCCCACGGCTCCCGCAGGCCGCCTGTCCCTTGAGCTCACCCGCCCCGGGCTCCTCACGCCTCTG
TCCATCTGGGAAAGAGACAGTGTGGGGAGCCGCCCTCTGTCCCAGGAGGGAGGTCTGGAGAGGG
GTTGTGCCCTGGGCCACTCCTGGGACCCTGACCCGGAGGAACTGTGCAGGGCAGTGCCCTCAGG
GAGGCCCGCCTGCCCCTTCCTTAGCAATACGACCAGTGTGTTCTCCCAGGGCATCGGCTGCAGA
GACCTGGCCGGTCAGGCTCCAGGGGCGTCGTGGTTCGGGGCTGGCCCACCACAGCTGTCCGGCC
CACCTGGCTCGCTGGGTTCCAGCAGTTGGTTTTGTAGCCGTGCTTCTGTCCCAGACAGCCGCTG
GCAGCCCCCTCCAGACCCTGTCTGGAAGGACAAGGCCACCTTCCATCGCCTGCCCAGTCAGGAG
CCCAAGGCCAGCACAGGAGACTGCCCCAGCCCAGGCTACTCTGGCACACGTGCGCTGGTGTCCA
CTTGCTGGCCCAAGGCAGTGCCTCCTGTCCCGTGAAAGGGCTTGGGACCTGCTGCCCACTCCTC
TGGGTGTCTGCTGCCCTGCAGGCATCTGGGCCACCTCCTGCCTGCCTCCTGGGGAGGTGACCCA
CTGACCACCCGGGGCTCGGTGGTGGGATGCAATAGCCCCGGGTGGGAAATAAAGCCATATTGAA
TGAA

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Protein Sequences


Protein RefSeqs	XP_005332071	(Get FASTA)	NCBI Sequence Viewer
	XP_021586544	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017005.1

RefSeq Acc Id:	XP_005332071 ⟸ XM_005332014
- Peptide Label:	isoform X1
- UniProtKB:	I3MY10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTR NAVLNTEARTMDADVLSRRCVLMRLADFSYEQYQKALRQSAGAVVIILPRAMAAVPQDVVRQFM EIEPEMLAMETIVPVYFAVEDEALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGVQ SKAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSLGADSNGSGVSVLLELARLFS RLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGSSL HLHVSRPPREGTLQHAFLRELETVAAHQFPEVRFSMVHKKINLADDVLAWEHERFAIRRLPAFT LSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQVQ QEQLDSVMDWLTNQPRAAQLLDKDGTFLSTLEHFLSRYLKDVRQHHVKADKRDPEFVFYDQLKQ VMNAYRVKPAIFDLLLAVCIGAYLGMAYTAVQHFDLLYKTVQRLLVKAKTP hide sequence

RefSeq Acc Id:

XP_021586544 ⟸ XM_021730869

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTR
NAVLNTEARTMDADVLSRRCVLMRLADFSYEQYQKALRQSAGAVVIILPRAMAAVPQDVVRQFM
EIEPEMLAMETIVPVYFAVEDEALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGVQ
SKAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSLGADSNGSGVSVLLELARLFS
RLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGSSL
HLHVSRPPREGTLQHAFLRELETVAAHQFPEVRFSMVHKKINLADDVLAWEHERFAIRRLPAFT
LSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMVQQ
EQLDSVMDWLTNQPRAAQLLDKDGTFLSTLEHFLSRYLKDVRQHHVKADKRDPEFVFYDQLKQV
MNAYRVKPAIFDLLLAVCIGAYLGMAYTAVQHFDLLYKTVQRLLVKAKTP

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RefSeq Acc Id:

ENSSTOP00000017005 ⟸ ENSSTOT00000024044

Protein Domains

Peptidase M28

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000022427	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024044.2	UniProtKB/TrEMBL
Gene3D-CATH	Zn peptidases	UniProtKB/TrEMBL
InterPro	Nicalin	UniProtKB/TrEMBL
	Peptidase_M28	UniProtKB/TrEMBL
NCBI Gene	Ncln	ENTREZGENE
PANTHER	NICALIN	UniProtKB/TrEMBL
	PTHR31826	UniProtKB/TrEMBL
Pfam	Peptidase_M28	UniProtKB/TrEMBL
PIRSF	Nicalin	UniProtKB/TrEMBL
Superfamily-SCOP	Zn-dependent exopeptidases	UniProtKB/TrEMBL
UniProt	I3MY10	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar