Tsku (tsukushi, small leucine rich proteoglycan) - Rat Genome Database

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Gene: Tsku (tsukushi, small leucine rich proteoglycan) Ictidomys tridecemlineatus
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Symbol: Tsku
Name: tsukushi, small leucine rich proteoglycan
RGD ID: 12669664
Description: ENCODES a protein that exhibits transforming growth factor beta binding (ortholog); INVOLVED IN anterior commissure morphogenesis (ortholog); camera-type eye development (ortholog); cholesterol efflux (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: tsukushin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494763,835,116 - 63,887,751 (+)NCBI
SpeTri2.0NW_0049364985,434,912 - 5,487,354 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Tsku
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494763,835,116 - 63,887,751 (+)NCBI
SpeTri2.0NW_0049364985,434,912 - 5,487,354 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSKU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1176,782,251 - 76,798,153 (+)EnsemblGRCh38hg38GRCh38
GRCh381176,782,280 - 76,798,144 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371176,493,324 - 76,509,188 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361176,171,933 - 76,186,846 (+)NCBINCBI36hg18NCBI36
Celera1173,801,738 - 73,816,651 (+)NCBI
Cytogenetic Map11q13.5NCBI
HuRef1172,791,056 - 72,806,897 (+)NCBIHuRef
CHM1_11176,376,410 - 76,392,251 (+)NCBICHM1_1
Tsku
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39797,999,875 - 98,010,602 (-)NCBIGRCm39mm39
GRCm39 Ensembl797,999,875 - 98,010,535 (-)Ensembl
GRCm38798,350,668 - 98,361,390 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,350,668 - 98,361,328 (-)EnsemblGRCm38mm10GRCm38
MGSCv377105,499,178 - 105,509,838 (-)NCBIGRCm37mm9NCBIm37
MGSCv36798,226,060 - 98,236,480 (-)NCBImm8
Celera798,670,613 - 98,681,273 (-)NCBICelera
Cytogenetic Map7E1NCBI
Tsku
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21152,660,259 - 152,671,682 (-)NCBI
Rnor_6.0 Ensembl1163,317,282 - 163,328,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01163,317,281 - 163,328,697 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01169,524,020 - 169,535,831 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41155,611,069 - 155,622,378 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11155,689,480 - 155,700,780 (-)NCBI
Celera1150,750,146 - 150,761,455 (-)NCBICelera
Cytogenetic Map1q32NCBI
Tsku
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541415,166,349 - 15,178,284 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541415,166,349 - 15,178,284 (-)NCBIChiLan1.0ChiLan1.0
TSKU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11175,480,674 - 75,495,449 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1175,492,912 - 75,493,973 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01171,833,654 - 71,848,509 (+)NCBIMhudiblu_PPA_v0panPan3
TSKU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12121,910,333 - 21,927,758 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2121,915,956 - 21,928,119 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2121,743,504 - 21,757,126 (-)NCBI
ROS_Cfam_1.02122,116,699 - 22,130,306 (-)NCBI
UMICH_Zoey_3.12121,887,862 - 21,901,417 (-)NCBI
UNSW_CanFamBas_1.02122,107,232 - 22,120,834 (-)NCBI
UU_Cfam_GSD_1.02122,030,572 - 22,044,179 (-)NCBI
TSKU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl910,927,342 - 10,942,668 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1910,927,224 - 10,940,851 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2912,036,689 - 12,050,312 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSKU
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,988,729 - 68,003,959 (+)NCBI
ChlSab1.1 Ensembl168,001,429 - 68,002,490 (+)Ensembl
Tsku
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624817364,543 - 379,742 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005323225   ⟹   XP_005323282
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494763,835,241 - 63,847,551 (+)NCBI
SpeTri2.0NW_0049364985,434,912 - 5,447,154 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284975   ⟹   XP_040140909
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494763,836,096 - 63,847,551 (+)NCBI
RefSeq Acc Id: XR_001229705
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494763,835,135 - 63,875,184 (+)NCBI
SpeTri2.0NW_0049364985,434,912 - 5,474,758 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002483723
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494763,835,116 - 63,887,751 (+)NCBI
SpeTri2.0NW_0049364985,434,912 - 5,487,354 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005733677
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494763,835,133 - 63,887,751 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005323282 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140909 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005323282   ⟸   XM_005323225
- UniProtKB: I3N5K7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140909   ⟸   XM_040284975


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021957 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000019653 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023207 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
NCBI Gene Tsku ENTREZGENE
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
UniProt I3N5K7 ENTREZGENE, UniProtKB/TrEMBL