Dcaf15 (DDB1 and CUL4 associated factor 15) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Dcaf15 (DDB1 and CUL4 associated factor 15) Ictidomys tridecemlineatus
Analyze
Symbol: Dcaf15
Name: DDB1 and CUL4 associated factor 15
RGD ID: 12668865
Description: ENCODES a protein that exhibits small molecule binding (inferred); INVOLVED IN protein polyubiquitination (inferred); protein ubiquitination (inferred); regulation of natural killer cell activation (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DDB1- and CUL4-associated factor 15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,691,469 - 207,698,654 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,655,544 - 2,662,834 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,656,072 - 2,663,237 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dcaf15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,691,469 - 207,698,654 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,655,544 - 2,662,834 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,656,072 - 2,663,237 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCAF15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381913,952,509 - 13,961,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1913,952,509 - 13,961,449 (+)EnsemblGRCh38hg38GRCh38
GRCh371914,063,321 - 14,072,261 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,924,319 - 13,933,256 (+)NCBINCBI36Build 36hg18NCBI36
Celera1913,956,945 - 13,965,882 (+)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1913,634,587 - 13,643,524 (+)NCBIHuRef
CHM1_11914,063,859 - 14,072,796 (+)NCBICHM1_1
T2T-CHM13v2.01914,078,793 - 14,087,733 (+)NCBIT2T-CHM13v2.0
Dcaf15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,823,698 - 84,831,426 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,823,701 - 84,831,397 (-)EnsemblGRCm39 Ensembl
GRCm38884,097,069 - 84,104,797 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,097,072 - 84,104,768 (-)EnsemblGRCm38mm10GRCm38
MGSCv37886,620,971 - 86,628,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,987,180 - 86,994,878 (-)NCBIMGSCv36mm8
Celera888,392,962 - 88,401,747 (-)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.3NCBI
Dcaf15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,958,693 - 40,966,043 (+)NCBIGRCr8
mRatBN7.21924,053,925 - 24,061,277 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,053,925 - 24,061,277 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1930,874,879 - 30,882,226 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01931,529,287 - 31,536,635 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,752,071 - 33,759,419 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,212,469 - 25,219,803 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,212,661 - 25,220,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,189,603 - 36,197,003 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,737,953 - 25,745,353 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11925,742,787 - 25,750,170 (+)NCBI
Celera1923,602,012 - 23,609,354 (+)NCBICelera
Cytogenetic Map19q11NCBI
Dcaf15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,701,701 - 32,710,051 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,701,701 - 32,710,051 (+)NCBIChiLan1.0ChiLan1.0
DCAF15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22018,881,636 - 18,890,644 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11917,882,512 - 17,891,522 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01913,514,672 - 13,523,689 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,243,793 - 14,252,804 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,243,793 - 14,252,804 (+)Ensemblpanpan1.1panPan2
DCAF15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,519,435 - 48,527,701 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2048,519,464 - 48,527,363 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,393,577 - 48,401,385 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,037,325 - 49,045,132 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,037,325 - 49,045,108 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,248,348 - 48,256,144 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,674,798 - 48,682,596 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,917,922 - 48,925,727 (-)NCBIUU_Cfam_GSD_1.0
DCAF15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,205,659 - 65,213,518 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,205,657 - 65,213,514 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,479,797 - 65,487,661 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCAF15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1612,607,738 - 12,617,046 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl612,607,753 - 12,619,717 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660747,038,141 - 7,047,468 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcaf15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,223,429 - 1,230,946 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249011,223,417 - 1,230,947 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000020497   ⟹   ENSSTOP00000015441
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366592,655,544 - 2,662,834 (+)Ensembl
RefSeq Acc Id: XM_040290372   ⟹   XP_040146306
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118207,691,469 - 207,698,654 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040146306 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015441.2
GenBank Protein KAG3280159 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040146306   ⟸   XM_040290372
- UniProtKB: I3MTJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000015441   ⟸   ENSSTOT00000020497
Protein Domains
DDB1- and CUL4-associated factor 15 WD40 repeat-


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024329 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020497.2 UniProtKB/TrEMBL
InterPro DCAF15 UniProtKB/TrEMBL
  DCAF15_C UniProtKB/TrEMBL
  DCAF15_WD40 UniProtKB/TrEMBL
NCBI Gene Dcaf15 ENTREZGENE
PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 15 UniProtKB/TrEMBL
  PTHR28541 UniProtKB/TrEMBL
Pfam DCAF15_WD40 UniProtKB/TrEMBL
UniProt I3MTJ6 ENTREZGENE, UniProtKB/TrEMBL