Chpf (chondroitin polymerizing factor) - Rat Genome Database

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Gene: Chpf (chondroitin polymerizing factor) Ictidomys tridecemlineatus
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Symbol: Chpf
Name: chondroitin polymerizing factor
RGD ID: 12667238
Description: ENCODES a protein that exhibits acetylgalactosaminyltransferase activity (inferred); glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); INVOLVED IN chondroitin sulfate biosynthetic process (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chondroitin sulfate synthase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,576,218 - 175,580,939 (-)NCBI
SpeTri2.0NW_0049365691,918,999 - 1,923,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Chpf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,576,218 - 175,580,939 (-)NCBI
SpeTri2.0NW_0049365691,918,999 - 1,923,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHPF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,538,954 - 219,543,809 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2219,538,954 - 219,543,809 (-)EnsemblGRCh38hg38GRCh38
GRCh372220,403,676 - 220,408,531 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362220,111,922 - 220,116,682 (-)NCBINCBI36hg18NCBI36
Celera2214,173,632 - 214,178,450 (-)NCBI
Cytogenetic Map2q35NCBI
HuRef2212,256,698 - 212,261,516 (-)NCBIHuRef
CHM1_12220,409,491 - 220,414,309 (-)NCBICHM1_1
T2T-CHM13v2.02220,023,653 - 220,028,508 (-)NCBI
Chpf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,451,213 - 75,456,115 (-)NCBIGRCm39mm39
GRCm39 Ensembl175,451,213 - 75,455,951 (-)Ensembl
GRCm38175,474,569 - 75,479,471 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,474,569 - 75,479,307 (-)EnsemblGRCm38mm10GRCm38
MGSCv37175,471,144 - 75,476,046 (-)NCBIGRCm37mm9NCBIm37
MGSCv36175,357,717 - 75,362,549 (-)NCBImm8
Celera175,963,982 - 75,968,882 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map139.14NCBI
Chpf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2976,963,178 - 76,967,878 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl976,963,184 - 76,967,878 (-)Ensembl
Rnor_6.0982,669,199 - 82,673,898 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,669,204 - 82,673,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,438,460 - 82,443,159 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,749,945 - 74,754,639 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1974,897,012 - 74,901,707 (-)NCBI
Celera974,533,082 - 74,537,776 (-)NCBICelera
Cytogenetic Map9q33NCBI
Chpf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545313,932,822 - 13,939,350 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545313,932,822 - 13,937,587 (+)NCBIChiLan1.0ChiLan1.0
CHPF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B225,386,262 - 225,391,239 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,386,262 - 225,390,886 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B106,796,215 - 106,801,081 (-)NCBIMhudiblu_PPA_v0panPan3
CHPF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13726,048,236 - 26,052,871 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3726,025,993 - 26,052,806 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,873,699 - 26,878,283 (-)NCBI
ROS_Cfam_1.03726,063,334 - 26,067,916 (-)NCBI
ROS_Cfam_1.0 Ensembl3726,063,323 - 26,067,901 (-)Ensembl
UMICH_Zoey_3.13725,967,198 - 25,971,779 (-)NCBI
UNSW_CanFamBas_1.03725,903,317 - 25,907,899 (-)NCBI
UU_Cfam_GSD_1.03725,923,906 - 25,928,488 (-)NCBI
CHPF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,544,230 - 121,553,288 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,547,666 - 121,553,590 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215134,588,262 - 134,594,031 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHPF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110105,433,966 - 105,438,861 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl10105,432,912 - 105,438,896 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604093,962,344 - 93,967,276 (+)NCBIVero_WHO_p1.0
Chpf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248235,518,410 - 5,525,312 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248235,518,382 - 5,522,997 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005330516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005330516   ⟹   XP_005330573
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303175,576,218 - 175,580,939 (-)NCBI
SpeTri2.0NW_0049365691,918,999 - 1,923,735 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005330573 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3275332 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005330573   ⟸   XM_005330516
- UniProtKB: I3MJ36 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012409 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000011119 ENTREZGENE
  ENSSTOP00000011119.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012410.3 UniProtKB/TrEMBL
InterPro Chond_GalNAc UniProtKB/TrEMBL
NCBI Gene Chpf ENTREZGENE
Pfam CHGN UniProtKB/TrEMBL
UniProt I3MJ36 ENTREZGENE, UniProtKB/TrEMBL