Serpina11 (serpin family A member 11) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Serpina11 (serpin family A member 11) Ictidomys tridecemlineatus
Analyze
Symbol: Serpina11
Name: serpin family A member 11
RGD ID: 12666885
Description: ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (inferred); ASSOCIATED WITH DICER1 syndrome (ortholog); genetic disease (ortholog); Hydrops Fetalis (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serpin A11
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864010,973,164 - 10,982,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493684651,188 - 58,246 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493684651,074 - 57,452 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Serpina11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864010,973,164 - 10,982,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493684651,188 - 58,246 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493684651,074 - 57,452 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERPINA11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381494,442,464 - 94,452,800 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1494,442,464 - 94,452,800 (-)EnsemblGRCh38hg38GRCh38
GRCh371494,908,801 - 94,919,137 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361493,978,554 - 93,988,875 (-)NCBINCBI36Build 36hg18NCBI36
Celera1474,964,705 - 74,975,013 (-)NCBICelera
Cytogenetic Map14q32.13NCBI
HuRef1475,089,005 - 75,099,380 (-)NCBIHuRef
CHM1_11494,846,601 - 94,856,919 (-)NCBICHM1_1
T2T-CHM13v2.01488,671,981 - 88,682,312 (-)NCBIT2T-CHM13v2.0
Serpina11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912103,946,502 - 103,956,227 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12103,946,502 - 103,956,216 (-)EnsemblGRCm39 Ensembl
GRCm3812103,980,243 - 103,989,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12103,980,243 - 103,989,957 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712105,218,453 - 105,228,167 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612104,381,305 - 104,390,971 (-)NCBIMGSCv36mm8
Celera12105,197,619 - 105,207,177 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.98NCBI
Serpina11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,668,030 - 128,677,476 (-)NCBIGRCr8
mRatBN7.26122,903,246 - 122,912,695 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,903,250 - 122,912,670 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6123,044,161 - 123,053,577 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,339,441 - 123,348,857 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,676,295 - 122,685,719 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,647,180 - 127,656,603 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,647,184 - 127,656,603 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06136,865,777 - 136,875,200 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46128,036,623 - 128,046,046 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16128,040,460 - 128,046,314 (-)NCBI
Celera6120,383,372 - 120,392,756 (-)NCBICelera
Cytogenetic Map6q32NCBI
SERPINA11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21595,590,935 - 95,601,794 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11494,807,440 - 94,818,271 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01475,065,755 - 75,076,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11494,398,596 - 94,408,909 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1494,398,596 - 94,408,909 (-)Ensemblpanpan1.1panPan2
SERPINA11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1863,436,710 - 63,453,354 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl863,323,933 - 63,453,708 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha863,013,258 - 63,029,900 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0863,703,227 - 63,720,226 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl863,703,229 - 63,720,256 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1863,378,847 - 63,395,495 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0863,431,181 - 63,447,840 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0863,761,856 - 63,778,513 (-)NCBIUU_Cfam_GSD_1.0
SERPINA11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7115,666,070 - 115,681,790 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17115,666,071 - 115,681,890 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27122,785,173 - 122,800,708 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SERPINA11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12472,223,849 - 72,236,880 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2472,223,638 - 72,232,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605359,450,610 - 59,463,702 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000013576   ⟹   ENSSTOP00000012164
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493684651,188 - 58,246 (-)Ensembl
RefSeq Acc Id: XM_040274321   ⟹   XP_040130255
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864010,973,164 - 10,982,697 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040130255 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012164.3
GenBank Protein KAG3260437 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040130255   ⟸   XM_040274321
- UniProtKB: I3ML97 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000012164   ⟸   ENSSTOT00000013576
Protein Domains
SERPIN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013578 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013576.3 UniProtKB/TrEMBL
Gene3D-CATH 2.30.39.10 UniProtKB/TrEMBL
  3.30.497.10 UniProtKB/TrEMBL
  6.20.40.10 UniProtKB/TrEMBL
  Serpins superfamily UniProtKB/TrEMBL
InterPro Serpin_dom UniProtKB/TrEMBL
  Serpin_fam UniProtKB/TrEMBL
  Serpin_sf UniProtKB/TrEMBL
  Serpin_sf_1 UniProtKB/TrEMBL
  Serpin_sf_2 UniProtKB/TrEMBL
NCBI Gene Serpina11 ENTREZGENE
PANTHER PTHR11461 UniProtKB/TrEMBL
  SERPIN A11 UniProtKB/TrEMBL
Pfam Serpin UniProtKB/TrEMBL
SMART SERPIN UniProtKB/TrEMBL
Superfamily-SCOP SSF56574 UniProtKB/TrEMBL
UniProt I3ML97 ENTREZGENE, UniProtKB/TrEMBL