Ppfia2 (PTPRF interacting protein alpha 2) - Rat Genome Database

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Gene: Ppfia2 (PTPRF interacting protein alpha 2) Ictidomys tridecemlineatus
Analyze
Symbol: Ppfia2
Name: PTPRF interacting protein alpha 2
RGD ID: 12666558
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); structural constituent of postsynaptic density (ortholog); structural constituent of presynapse (ortholog); INVOLVED IN regulation of synaptic vesicle exocytosis (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic specialization (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: liprin-alpha-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494536,381,131 - 36,821,732 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366982,094,374 - 2,531,465 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366982,090,768 - 2,531,366 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppfia2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494536,381,131 - 36,821,732 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366982,094,374 - 2,531,465 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366982,090,768 - 2,531,366 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPFIA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381281,257,975 - 81,759,350 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1281,257,975 - 81,759,553 (-)EnsemblGRCh38hg38GRCh38
GRCh371281,651,754 - 82,153,129 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361280,177,487 - 80,677,240 (-)NCBINCBI36Build 36hg18NCBI36
Build 341280,155,823 - 80,655,577NCBI
Celera1281,321,211 - 81,820,889 (-)NCBICelera
Cytogenetic Map12q21.31NCBI
HuRef1278,708,811 - 79,209,133 (-)NCBIHuRef
CHM1_11281,618,521 - 82,119,470 (-)NCBICHM1_1
T2T-CHM13v2.01281,236,956 - 81,738,412 (-)NCBIT2T-CHM13v2.0
Ppfia2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910106,305,129 - 106,769,329 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10106,306,200 - 106,771,813 (+)EnsemblGRCm39 Ensembl
GRCm3810106,469,500 - 106,933,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10106,470,339 - 106,935,952 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710105,907,395 - 106,369,574 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610105,874,449 - 106,336,628 (+)NCBIMGSCv36mm8
Celera10108,413,090 - 108,874,050 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1055.39NCBI
Ppfia2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8743,652,258 - 44,126,555 (+)NCBIGRCr8
mRatBN7.2741,765,716 - 42,240,104 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl741,765,575 - 42,239,599 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx743,671,707 - 44,144,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0745,874,782 - 46,347,515 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0745,652,995 - 46,125,395 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0748,548,932 - 49,045,852 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl748,867,664 - 49,042,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0748,563,521 - 48,568,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0748,658,858 - 49,058,116 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4745,140,154 - 45,616,620 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1745,160,426 - 45,636,728 (+)NCBI
Celera738,644,350 - 39,116,317 (+)NCBICelera
Cytogenetic Map7q21NCBI
Ppfia2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540519,839,092 - 20,286,578 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540519,837,749 - 20,291,666 (-)NCBIChiLan1.0ChiLan1.0
PPFIA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21089,297,594 - 89,800,504 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11289,293,993 - 89,796,899 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01278,768,756 - 79,271,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11281,879,812 - 82,381,524 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1281,879,812 - 82,376,917 (-)Ensemblpanpan1.1panPan2
PPFIA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11523,481,370 - 23,950,412 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1523,482,549 - 23,951,141 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1523,904,766 - 24,373,671 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01523,842,759 - 24,321,109 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1523,842,772 - 24,320,345 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11523,428,189 - 23,897,907 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01523,479,044 - 23,947,917 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01523,719,822 - 24,188,937 (-)NCBIUU_Cfam_GSD_1.0
PPFIA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl599,819,430 - 100,279,030 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1599,818,591 - 100,279,029 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25105,054,270 - 105,195,571 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPFIA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11176,740,204 - 77,237,990 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1176,736,719 - 77,079,140 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037168,176,151 - 168,685,075 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppfia2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624837629,302 - 1,111,081 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624837627,484 - 1,116,597 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000013987   ⟹   ENSSTOP00000012534
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366982,094,374 - 2,526,866 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000041322   ⟹   ENSSTOP00000032156
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366982,251,195 - 2,531,465 (-)Ensembl
RefSeq Acc Id: XM_040281821   ⟹   XP_040137755
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494536,381,131 - 36,821,732 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040137755 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012534.3
  ENSSTOP00000032156.1
GenBank Protein KAG3291311 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040137755   ⟸   XM_040281821
- UniProtKB: I3MM28 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000032156   ⟸   ENSSTOT00000041322
Ensembl Acc Id: ENSSTOP00000012534   ⟸   ENSSTOT00000013987
Protein Domains
SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013971 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013987.3 UniProtKB/TrEMBL
  ENSSTOT00000041322.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro Liprin UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_1 UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_3 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
NCBI Gene Ppfia2 ENTREZGENE
PANTHER PTHR12587 UniProtKB/TrEMBL
  PTHR12587:SF6 UniProtKB/TrEMBL
Pfam SAM_1 UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt A0A287DF16_ICTTR UniProtKB/TrEMBL
  I3MM28 ENTREZGENE, UniProtKB/TrEMBL