Zbtb46 (zinc finger and BTB domain containing 46) - Rat Genome Database

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Gene: Zbtb46 (zinc finger and BTB domain containing 46) Ictidomys tridecemlineatus
Analyze
Symbol: Zbtb46
Name: zinc finger and BTB domain containing 46
RGD ID: 12666268
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN dendritic cell differentiation (ortholog); granulocyte differentiation (ortholog); macrophage differentiation (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); chronic recurrent multifocal osteomyelitis (ortholog); FOUND IN chromatin (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain-containing protein 46
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,534,424 - 195,591,233 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,987,984 - 11,027,502 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,987,728 - 11,027,450 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbtb46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,534,424 - 195,591,233 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,987,984 - 11,027,502 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,987,728 - 11,027,450 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,743,670 - 63,833,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,743,668 - 63,832,038 (-)EnsemblGRCh38hg38GRCh38
GRCh372062,375,023 - 62,462,617 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,846,322 - 61,907,300 (-)NCBINCBI36Build 36hg18NCBI36
Build 342061,846,321 - 61,907,300NCBI
Celera2059,060,148 - 59,121,043 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2059,107,402 - 59,169,665 (-)NCBIHuRef
CHM1_12062,276,804 - 62,338,651 (-)NCBICHM1_1
T2T-CHM13v2.02065,563,936 - 65,653,841 (-)NCBIT2T-CHM13v2.0
Zbtb46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,012,105 - 181,134,776 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2181,029,555 - 181,101,219 (-)EnsemblGRCm39 Ensembl
GRCm382181,371,009 - 181,493,262 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,387,762 - 181,459,426 (-)EnsemblGRCm38mm10GRCm38
MGSCv372181,125,591 - 181,194,131 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362181,339,957 - 181,388,833 (-)NCBIMGSCv36mm8
Celera2185,473,180 - 185,541,076 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.63NCBI
Zbtb46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,874,826 - 188,949,005 (-)NCBIGRCr8
mRatBN7.23168,497,294 - 168,567,799 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,499,583 - 168,568,782 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,880,119 - 172,915,848 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,839,222 - 181,874,951 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,500,518 - 178,536,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,888,502 - 176,959,009 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,890,806 - 176,958,880 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,600,938 - 180,636,854 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,531,198 - 170,567,755 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13170,438,230 - 170,473,765 (-)NCBI
Celera3164,051,059 - 164,086,966 (+)NCBICelera
Cytogenetic Map3q43NCBI
Zbtb46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528438,859 - 475,543 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955528438,826 - 485,484 (+)NCBIChiLan1.0ChiLan1.0
ZBTB46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,551,615 - 69,640,290 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,543,622 - 69,632,292 (-)NCBINHGRI_mPanPan1
PanPan1.12061,667,319 - 61,770,196 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,667,319 - 61,713,895 (-)Ensemblpanpan1.1panPan2
ZBTB46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,290,696 - 47,329,342 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,292,684 - 47,329,570 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,411,808 - 46,462,963 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02448,416,755 - 48,467,877 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2448,407,272 - 48,468,318 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12447,261,648 - 47,312,709 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,386,485 - 47,437,532 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02448,124,616 - 48,175,799 (-)NCBIUU_Cfam_GSD_1.0
ZBTB46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,659,786 - 62,709,235 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,659,779 - 62,715,221 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZBTB46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12397,663 - 487,145 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2398,268 - 483,923 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605047,938,412 - 48,040,753 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,398,784 - 29,463,641 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,397,900 - 29,443,605 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000012018   ⟹   ENSSTOP00000010784
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493651411,010,124 - 11,027,418 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000036711   ⟹   ENSSTOP00000030221
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493651410,987,984 - 11,027,502 (-)Ensembl
RefSeq Acc Id: XM_005325337   ⟹   XP_005325394
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,534,424 - 195,591,233 (-)NCBI
SpeTri2.0NW_00493651410,987,728 - 11,027,450 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275595   ⟹   XP_040131529
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,553,759 - 195,591,233 (-)NCBI
RefSeq Acc Id: XR_005729560
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640195,553,726 - 195,591,233 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005325394 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131529 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010784.3
  ENSSTOP00000030221.1
GenBank Protein KAG3263714 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005325394   ⟸   XM_005325337
- Peptide Label: isoform X1
- UniProtKB: A0A287D9N4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131529   ⟸   XM_040275595
- Peptide Label: isoform X2
- UniProtKB: I3MIE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000030221   ⟸   ENSSTOT00000036711
RefSeq Acc Id: ENSSTOP00000010784   ⟸   ENSSTOT00000012018
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012003 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012018.3 UniProtKB/TrEMBL
  ENSSTOT00000036711.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zbtb46 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN CONTAINING 46 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287D9N4 ENTREZGENE, UniProtKB/TrEMBL
  I3MIE8 ENTREZGENE, UniProtKB/TrEMBL