L1cam (L1 cell adhesion molecule) - Rat Genome Database

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Gene: L1cam (L1 cell adhesion molecule) Ictidomys tridecemlineatus
Analyze
Symbol: L1cam
Name: L1 cell adhesion molecule
RGD ID: 12666237
Description: ENCODES a protein that exhibits identical protein binding (ortholog); integrin binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN axon guidance (ortholog); axonal fasciculation (ortholog); calcium-mediated signaling (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); Alzheimer's disease (ortholog); anxiety disorder (ortholog); FOUND IN axon (ortholog); axonal growth cone (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: L1 cell adhesion molecule, transcript variant X1; L1 cell adhesion molecule, transcript variant X2; neural cell adhesion molecule L1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,998,614 - 119,024,196 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809736,319 - 761,973 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809736,385 - 768,822 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
adrenoleukodystrophy  (ISO)
Alzheimer's disease  (ISO)
anxiety disorder  (ISO)
aphasia  (ISO)
autistic disorder  (ISO)
Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 23  (ISO)
Barth syndrome  (ISO)
bipolar disorder  (ISO)
cerebellar ataxia  (ISO)
cerebellar hypoplasia  (ISO)
cerebral creatine deficiency syndrome 1  (ISO)
colorectal cancer  (ISO)
Congenital Hand Deformities  (ISO)
depressive disorder  (ISO)
Developmental Disabilities  (ISO)
dyskeratosis congenita  (ISO)
Emery-Dreifuss muscular dystrophy  (ISO)
favism  (ISO)
genetic disease  (ISO)
glioblastoma  (ISO)
hereditary spastic paraplegia  (ISO)
Hirschsprung's disease  (ISO)
Huntington's disease  (ISO)
hydrocephalus  (ISO)
hypothyroidism  (ISO)
immunodeficiency 33  (ISO)
intellectual disability  (ISO)
lung non-small cell carcinoma  (ISO)
MASA syndrome  (ISO)
Neoplasm Metastasis  (ISO)
Neurologic Gait Disorders  (ISO)
ovarian carcinoma  (ISO)
pancreatic cancer  (ISO)
pancreatic ductal carcinoma  (ISO)
paraplegia  (ISO)
Parkinson's disease  (ISO)
Partial Agenesis of Corpus Callosum, X-Linked  (ISO)
Peripheral Nerve Injuries  (ISO)
periventricular nodular heterotopia  (ISO)
pheochromocytoma  (ISO)
Posthemorrhagic Hydrocephalus  (ISO)
renal cell carcinoma  (ISO)
schizophrenia  (ISO)
severe congenital encephalopathy due to MECP2 mutation  (ISO)
Spinal Cord Compression  (ISO)
Splenomegaly  (ISO)
syndromic X-linked intellectual disability Lubs type  (ISO)
uterine cancer  (ISO)
X-Linked Hydrocephalus  (ISO)
X-Linked Hydrocephalus, with Congenital Idiopathic Intestinal Pseudoobstruction  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
axon development  (IEA)
axon guidance  (IEA,ISO)
axonal fasciculation  (ISO)
brain development  (IEA)
calcium-mediated signaling  (ISO)
cell adhesion  (IEA)
cell migration  (IEA)
cell surface receptor signaling pathway  (ISO)
cell-cell adhesion mediated by integrin  (ISO)
cell-matrix adhesion  (IEA)
cellular response to dexamethasone stimulus  (ISO)
cellular response to ethanol  (ISO)
cellular response to nerve growth factor stimulus  (ISO)
cellular response to thyroxine stimulus  (ISO)
cellular response to transforming growth factor beta stimulus  (ISO)
cerebellar neuron development  (ISO)
dopaminergic neuron differentiation  (ISO)
heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  (ISO)
homophilic cell adhesion via plasma membrane adhesion molecules  (ISO)
homotypic cell-cell adhesion  (ISO)
leukocyte cell-cell adhesion  (ISO)
maintenance of synapse structure  (ISO)
modulation of chemical synaptic transmission  (ISO)
neuron differentiation  (ISO)
neuron projection development  (IEA,ISO)
positive regulation of axon extension  (ISO)
positive regulation of calcium-mediated signaling  (ISO)
positive regulation of cell-cell adhesion  (ISO)
positive regulation of cell-substrate adhesion  (ISO)
protein localization to plasma membrane raft  (ISO)
regulation of ERK1 and ERK2 cascade  (ISO)
regulation of neuron projection development  (ISO)
regulation of protein phosphorylation  (ISO)
regulation of synapse assembly  (ISO)
response to activity  (ISO)
response to thyroid hormone  (ISO)
response to toluene  (ISO)
synapse organization  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
L1cam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,998,614 - 119,024,196 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809736,319 - 761,973 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809736,385 - 768,822 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
L1CAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,861,514 - 153,886,173 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,861,514 - 153,886,173 (-)EnsemblGRCh38hg38GRCh38
GRCh37X153,126,969 - 153,151,627 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,780,581 - 152,794,505 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X152,648,233 - 152,662,158NCBI
CeleraX153,360,655 - 153,375,083 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX141,783,485 - 141,798,078 (-)NCBIHuRef
CHM1_1X153,001,369 - 153,026,043 (-)NCBICHM1_1
T2T-CHM13v2.0X152,135,195 - 152,159,857 (-)NCBIT2T-CHM13v2.0
L1cam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,897,384 - 72,924,843 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,897,384 - 72,939,711 (-)EnsemblGRCm39 Ensembl
GRCm38X73,853,778 - 73,880,838 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,853,778 - 73,896,105 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X71,099,119 - 71,126,173 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,107,755 - 70,122,524 (-)NCBIMGSCv36mm8
CeleraX65,106,167 - 65,133,066 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.43NCBI
L1cam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,748,597 - 156,775,116 (-)NCBIGRCr8
mRatBN7.2X151,597,270 - 151,623,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,597,277 - 151,623,857 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,738,430 - 153,754,814 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,301,656 - 157,318,040 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,973,488 - 154,989,873 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,901,244 - 156,928,064 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,909,913 - 156,928,057 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,649,353 - 152,676,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,784,792 - 159,801,553 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1136,279,868 - 136,293,057 (+)NCBICelera
Cytogenetic MapXq37NCBI
L1cam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580549,368 - 561,486 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955580548,442 - 561,580 (-)NCBIChiLan1.0ChiLan1.0
L1CAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,902,285 - 153,927,077 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,905,891 - 153,930,683 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,412,303 - 143,437,090 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,298,690 - 153,324,228 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,298,690 - 153,324,228 (-)Ensemblpanpan1.1panPan2
L1CAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,708,695 - 121,722,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,708,894 - 121,733,365 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX107,037,463 - 107,051,578 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,849,997 - 124,864,112 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,850,009 - 124,874,639 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,619,271 - 120,633,384 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,134,526 - 123,148,641 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,895,999 - 122,910,117 (-)NCBIUU_Cfam_GSD_1.0
L1CAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,595,651 - 124,618,307 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,595,649 - 124,618,292 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X142,160,416 - 142,182,924 (-)NCBISscrofa10.2Sscrofa10.2susScr3
L1CAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,285,128 - 128,309,173 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX128,285,130 - 128,299,570 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606566,154,181 - 66,179,381 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
L1cam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946513,297 - 525,009 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946512,413 - 533,669 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000008335   ⟹   ENSSTOP00000007470
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936809736,401 - 761,943 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000038900   ⟹   ENSSTOP00000032247
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936809736,319 - 761,973 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000042088   ⟹   ENSSTOP00000030820
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936809736,319 - 761,973 (-)Ensembl
RefSeq Acc Id: XM_021720444   ⟹   XP_021576119
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X118,998,614 - 119,024,196 (-)NCBI
SpeTri2.0NW_004936809736,385 - 761,967 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287045   ⟹   XP_040142979
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X118,998,614 - 119,024,196 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021576119 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142979 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007470.3
  ENSSTOP00000030820.1
  ENSSTOP00000032247.1
GenBank Protein KAG3273203 (Get FASTA)   NCBI Sequence Viewer  
  KAG3273204 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021576119   ⟸   XM_021720444
- Peptide Label: isoform X1
- UniProtKB: A0A287DFG0 (UniProtKB/TrEMBL),   A0A287DB80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040142979   ⟸   XM_040287045
- Peptide Label: isoform X2
- UniProtKB: I3MBG0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000007470   ⟸   ENSSTOT00000008335
RefSeq Acc Id: ENSSTOP00000032247   ⟸   ENSSTOT00000038900
RefSeq Acc Id: ENSSTOP00000030820   ⟸   ENSSTOT00000042088
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008316 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008335.3 UniProtKB/TrEMBL
  ENSSTOT00000038900.1 UniProtKB/TrEMBL
  ENSSTOT00000042088.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Neurofascin/L1/NrCAM_C UniProtKB/TrEMBL
NCBI Gene L1cam ENTREZGENE
PANTHER L1 CELL ADHESION MOLECULE UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
Pfam Bravo_FIGEY UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A287DB80 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DFG0 ENTREZGENE, UniProtKB/TrEMBL
  I3MBG0 ENTREZGENE, UniProtKB/TrEMBL