LOC101960407 (interferon-induced protein with tetratricopeptide repeats 2-like) - Rat Genome Database

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Gene: LOC101960407 (interferon-induced protein with tetratricopeptide repeats 2-like) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101960407
Name: interferon-induced protein with tetratricopeptide repeats 2-like
RGD ID: 12666036
Description: INVOLVED IN defense response to virus (inferred); response to other organism (inferred); FOUND IN cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,310,951 - 43,317,360 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366014,943,606 - 4,949,913 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005333749   ⟹   XP_005333806
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721343,310,951 - 43,317,360 (-)NCBI
SpeTri2.0NW_0049366014,943,606 - 4,949,913 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333806 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014880.2
GenBank Protein KAG3264526 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005333806   ⟸   XM_005333749
- UniProtKB: I3MRY5 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026437 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026902.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene LOC101960407 ENTREZGENE
PANTHER INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS UniProtKB/TrEMBL
  PTHR10271:SF4 UniProtKB/TrEMBL
Pfam TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt I3MRY5 ENTREZGENE, UniProtKB/TrEMBL