Osbpl1a (oxysterol binding protein like 1A) - Rat Genome Database

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Gene: Osbpl1a (oxysterol binding protein like 1A) Ictidomys tridecemlineatus
Analyze
Symbol: Osbpl1a
Name: oxysterol binding protein like 1A
RGD ID: 12665238
Description: ENCODES a protein that exhibits cholesterol binding (inferred); lipid binding (inferred); INVOLVED IN lipid transport (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytosol (inferred); endosome (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: oxysterol binding protein like 1A, transcript variant X1; oxysterol binding protein like 1A, transcript variant X10; oxysterol binding protein like 1A, transcript variant X11; oxysterol binding protein like 1A, transcript variant X12; oxysterol binding protein like 1A, transcript variant X13; oxysterol binding protein like 1A, transcript variant X2; oxysterol binding protein like 1A, transcript variant X3; oxysterol binding protein like 1A, transcript variant X4; oxysterol binding protein like 1A, transcript variant X5; oxysterol binding protein like 1A, transcript variant X6; oxysterol binding protein like 1A, transcript variant X7; oxysterol binding protein like 1A, transcript variant X8; oxysterol binding protein like 1A, transcript variant X9; oxysterol-binding protein-related protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,070,367 - 60,269,932 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365503,544,419 - 3,746,059 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365503,545,941 - 3,745,716 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Osbpl1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,070,367 - 60,269,932 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365503,544,419 - 3,746,059 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365503,545,941 - 3,745,716 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSBPL1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381824,162,045 - 24,397,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1824,162,045 - 24,397,880 (-)EnsemblGRCh38hg38GRCh38
GRCh371821,742,009 - 21,977,788 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361819,996,007 - 20,231,788 (-)NCBINCBI36Build 36hg18NCBI36
Build 341819,996,010 - 20,231,788NCBI
Celera1818,558,319 - 18,792,861 (-)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1818,598,065 - 18,833,825 (-)NCBIHuRef
CHM1_11821,669,277 - 21,904,868 (-)NCBICHM1_1
T2T-CHM13v2.01824,356,384 - 24,592,191 (-)NCBIT2T-CHM13v2.0
Osbpl1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391812,886,955 - 13,074,933 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1812,888,371 - 13,074,898 (-)EnsemblGRCm39 Ensembl
GRCm381812,753,898 - 12,941,871 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1812,755,314 - 12,941,841 (-)EnsemblGRCm38mm10GRCm38
MGSCv371812,914,537 - 13,100,229 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361812,899,197 - 13,084,889 (-)NCBIMGSCv36mm8
Celera1812,987,816 - 13,172,462 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map186.78NCBI
Osbpl1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8184,178,734 - 4,383,511 (-)NCBIGRCr8
mRatBN7.2183,904,006 - 4,094,635 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,904,006 - 4,094,585 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,127,907 - 4,317,941 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0184,915,466 - 5,105,503 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,174,553 - 4,365,195 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0184,097,011 - 4,294,136 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,097,012 - 4,294,136 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0184,089,698 - 4,282,305 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera183,960,347 - 4,144,308 (-)NCBICelera
Cytogenetic Map18p13NCBI
Osbpl1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540212,530,135 - 12,718,703 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540212,530,130 - 12,718,703 (-)NCBIChiLan1.0ChiLan1.0
OSBPL1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21741,594,237 - 41,857,937 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11827,286,833 - 27,550,335 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01817,414,824 - 17,669,178 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11821,037,587 - 21,270,216 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1821,037,586 - 21,270,216 (-)Ensemblpanpan1.1panPan2
OSBPL1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1763,995,570 - 64,223,213 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl763,995,184 - 64,222,157 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha763,444,473 - 63,672,084 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0764,054,333 - 64,281,774 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl764,054,357 - 64,281,762 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1763,724,290 - 63,951,485 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0763,738,846 - 63,966,751 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0764,043,599 - 64,271,300 (+)NCBIUU_Cfam_GSD_1.0
OSBPL1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,997,735 - 109,221,010 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16108,997,730 - 109,241,950 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26101,663,953 - 101,813,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OSBPL1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11856,122,942 - 56,370,730 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1856,144,766 - 56,369,599 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605030,889,832 - 31,120,382 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Osbpl1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247707,864,036 - 8,054,881 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247707,855,776 - 8,054,886 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005329044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005329045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013360215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013360216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013360217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013360218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021728921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021728922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021728923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021728925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021728926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021728927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021728928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040274275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040274279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040274290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000006477   ⟹   ENSSTOP00000005791
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365503,544,419 - 3,746,059 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035436   ⟹   ENSSTOP00000024368
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365503,544,419 - 3,654,839 (-)Ensembl
RefSeq Acc Id: XM_005329044   ⟹   XP_005329101
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,070,368 - 60,269,932 (+)NCBI
SpeTri2.0NW_0049365503,546,147 - 3,745,628 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005329045   ⟹   XP_005329102
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,161,298 - 60,269,932 (+)NCBI
SpeTri2.0NW_0049365503,546,147 - 3,654,858 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360215   ⟹   XP_013215669
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,070,368 - 60,269,932 (+)NCBI
SpeTri2.0NW_0049365503,546,147 - 3,745,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360218   ⟹   XP_013215672
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,162,060 - 60,269,932 (+)NCBI
SpeTri2.0NW_0049365503,546,147 - 3,654,001 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728927   ⟹   XP_021584602
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,164,468 - 60,269,932 (+)NCBI
SpeTri2.0NW_0049365503,546,147 - 3,651,616 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728928   ⟹   XP_021584603
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,129,915 - 60,269,932 (+)NCBI
SpeTri2.0NW_0049365503,545,941 - 3,629,879 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040274275   ⟹   XP_040130209
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,070,367 - 60,269,932 (+)NCBI
RefSeq Acc Id: XM_040274279   ⟹   XP_040130213
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,070,367 - 60,269,932 (+)NCBI
RefSeq Acc Id: XM_040274290   ⟹   XP_040130224
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494460,090,056 - 60,269,932 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013215669   ⟸   XM_013360215
- Peptide Label: isoform X2
- UniProtKB: I3M7Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005329101   ⟸   XM_005329044
- Peptide Label: isoform X2
- UniProtKB: I3M7Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005329102   ⟸   XM_005329045
- Peptide Label: isoform X5
- UniProtKB: A0A287CSX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013215672   ⟸   XM_013360218
- Peptide Label: isoform X5
- UniProtKB: A0A287CSX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584603   ⟸   XM_021728928
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021584602   ⟸   XM_021728927
- Peptide Label: isoform X5
- UniProtKB: A0A287CSX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130209   ⟸   XM_040274275
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040130213   ⟸   XM_040274279
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040130224   ⟸   XM_040274290
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000024368   ⟸   ENSSTOT00000035436
RefSeq Acc Id: ENSSTOP00000005791   ⟸   ENSSTOT00000006477
Protein Domains
PH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006443 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006477.3 UniProtKB/TrEMBL
  ENSSTOT00000035436.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  2.40.160.120 UniProtKB/TrEMBL
  3.30.70.3490 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  OSBP_sf UniProtKB/TrEMBL
  Oxysterol-bd UniProtKB/TrEMBL
  Oxysterol-bd_CS UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
NCBI Gene Osbpl1a ENTREZGENE
PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR10972 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Ank_5 UniProtKB/TrEMBL
  Oxysterol_BP UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  OSBP UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF144000 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
UniProt A0A287CSX7 ENTREZGENE, UniProtKB/TrEMBL
  I3M7Z7 ENTREZGENE, UniProtKB/TrEMBL