Ubp1 (upstream binding protein 1) - Rat Genome Database
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Gene: Ubp1 (upstream binding protein 1) Ictidomys tridecemlineatus
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Symbol: Ubp1
Name: upstream binding protein 1
RGD ID: 12665100
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN angiogenesis (ortholog); negative regulation of viral transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: upstream binding protein 1 (LBP-1a); upstream-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647323,658,243 - 23,711,768 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

References

Genomics

Comparative Map Data
Ubp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647323,658,243 - 23,711,768 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl333,388,336 - 33,441,371 (-)EnsemblGRCh38hg38GRCh38
GRCh38333,388,336 - 33,440,405 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37333,429,828 - 33,481,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,404,835 - 33,456,874 (-)NCBINCBI36hg18NCBI36
Build 34333,404,834 - 33,456,874NCBI
Celera333,373,357 - 33,425,407 (-)NCBI
Cytogenetic Map3p22.3NCBI
HuRef333,370,390 - 33,422,369 (-)NCBIHuRef
CHM1_1333,379,810 - 33,431,856 (-)NCBICHM1_1
Ubp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399113,760,002 - 113,807,095 (+)NCBIGRCm39mm39
GRCm389113,930,939 - 113,978,027 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9113,930,934 - 113,977,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv379113,840,052 - 113,886,320 (+)NCBIGRCm37mm9NCBIm37
MGSCv369113,780,350 - 113,825,700 (+)NCBImm8
Celera9113,640,161 - 113,686,339 (+)NCBICelera
Cytogenetic Map9F3NCBI
Ubp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28113,869,771 - 113,915,625 (+)NCBI
Rnor_6.0 Ensembl8122,197,027 - 122,240,357 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08122,196,576 - 122,241,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08121,510,557 - 121,554,898 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,574,348 - 118,618,657 (+)NCBIRGSC3.4rn4RGSC3.4
Celera8113,117,821 - 113,162,107 (+)NCBICelera
Cytogenetic Map8q32NCBI
Ubp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955421618,696 - 681,994 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955421618,696 - 681,994 (-)NCBIChiLan1.0ChiLan1.0
UBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1333,611,712 - 33,663,175 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,611,712 - 33,663,175 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0333,310,506 - 33,362,589 (-)NCBIMhudiblu_PPA_v0panPan3
UBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl233,444,758 - 3,497,263 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1233,445,730 - 3,498,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
UBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1319,204,947 - 19,276,969 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11319,203,965 - 19,276,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,785,120 - 20,831,156 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,880,650 - 77,933,829 (-)NCBI
ChlSab1.1 Ensembl1577,882,632 - 77,933,864 (-)Ensembl
Ubp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478811,350,243 - 11,409,942 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005317330   ⟹   XP_005317387
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493647323,659,203 - 23,711,768 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005317331   ⟹   XP_005317388
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493647323,658,243 - 23,711,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013361581   ⟹   XP_013217035
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493647323,666,710 - 23,711,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021731862   ⟹   XP_021587537
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493647323,658,243 - 23,711,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021731866   ⟹   XP_021587541
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493647323,658,243 - 23,695,554 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002484828
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493647323,666,399 - 23,711,264 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005317388   ⟸   XM_005317331
- Peptide Label: isoform X3
- UniProtKB: A0A287D8C2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005317387   ⟸   XM_005317330
- Peptide Label: isoform X1
- UniProtKB: I3MIJ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013217035   ⟸   XM_013361581
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021587537   ⟸   XM_021731862
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021587541   ⟸   XM_021731866
- Peptide Label: isoform X2
- Sequence:
Protein Domains
CP2   SAM_3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012083 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000010838 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000029756 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012086 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOT00000031488 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro CP2 UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
  Ubp1_SAM UniProtKB/TrEMBL
NCBI Gene Ubp1 ENTREZGENE
Pfam CP2 UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt A0A287D8C2 ENTREZGENE, UniProtKB/TrEMBL
  I3MIJ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-08 Ubp1  upstream binding protein 1    upstream binding protein 1 (LBP-1a)  Symbol and/or name change 5135510 APPROVED