LOC101962113 (stimulated by retinoic acid gene 8 protein) - Rat Genome Database

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Gene: LOC101962113 (stimulated by retinoic acid gene 8 protein) Ictidomys tridecemlineatus
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Symbol: LOC101962113 (Ensembl: STRA8)
Name: stimulated by retinoic acid gene 8 protein
RGD ID: 12665074
Description: ENCODES a protein that exhibits protein dimerization activity (inferred); INVOLVED IN activation of meiosis (inferred); cellular response to retinoic acid (inferred); male germ-line stem cell asymmetric division (inferred); FOUND IN cytoplasm (inferred); male germ cell nucleus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stimulated by retinoic acid 8; Stra8
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511820,566,853 - 20,587,427 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936579700,209 - 720,002 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936579700,209 - 720,002 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013361073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000004800   ⟹   ENSSTOP00000004311
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936579700,209 - 720,002 (-)Ensembl
RefSeq Acc Id: XM_013361073   ⟹   XP_013216527
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511820,566,853 - 20,587,427 (-)NCBI
SpeTri2.0NW_004936579700,209 - 720,002 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013216527 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004311.3
GenBank Protein KAG3277426 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013216527   ⟸   XM_013361073
- UniProtKB: I3M4W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000004311   ⟸   ENSSTOT00000004800


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004803 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004800.3 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro HLH_DNA-bd_sf UniProtKB/TrEMBL
  Stra8 UniProtKB/TrEMBL
NCBI Gene LOC101962113 ENTREZGENE
PANTHER PTHR35254 UniProtKB/TrEMBL
  STIMULATED BY RETINOIC ACID GENE 8 PROTEIN HOMOLOG UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt I3M4W6 ENTREZGENE, UniProtKB/TrEMBL