Actg1 (actin gamma 1) - Rat Genome Database

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Gene: Actg1 (actin gamma 1) Ictidomys tridecemlineatus
Analyze
Symbol: Actg1
Name: actin gamma 1
RGD ID: 12664704
Description: ENCODES a protein that exhibits identical protein binding (ortholog); profilin binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to type II interferon (ortholog); morphogenesis of a polarized epithelium (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Animal Mammary Neoplasms (ortholog); autosomal dominant nonsyndromic deafness 20 (ortholog); FOUND IN apical junction complex (ortholog); calyx of Held (ortholog); cell-cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin, cytoplasmic 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,238,788 - 1,241,248 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,170,711 - 5,173,247 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,170,711 - 5,173,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Actg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,238,788 - 1,241,248 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,170,711 - 5,173,247 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,170,711 - 5,173,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,509,971 - 81,512,799 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,509,413 - 81,523,847 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,476,997 - 79,479,825 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,091,594 - 77,094,422 (-)NCBINCBI36Build 36hg18NCBI36
Build 341777,091,593 - 77,094,422NCBI
Cytogenetic Map17q25.3NCBI
HuRef1774,925,813 - 74,928,708 (-)NCBIHuRef
CHM1_11779,563,278 - 79,566,173 (-)NCBICHM1_1
T2T-CHM13v2.01782,427,089 - 82,429,917 (-)NCBIT2T-CHM13v2.0
Actg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,236,513 - 120,239,321 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,236,516 - 120,239,368 (-)EnsemblGRCm39 Ensembl
GRCm3811120,345,687 - 120,348,495 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,345,690 - 120,348,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,207,004 - 120,209,798 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,161,780 - 120,171,339 (-)NCBIMGSCv36mm8
Celera11132,080,255 - 132,083,049 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.07NCBI
Actg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,118,106 - 106,120,951 (-)NCBIGRCr8
mRatBN7.210105,619,738 - 105,622,587 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl372,977,767 - 72,979,694 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl10105,619,737 - 105,624,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10110,724,157 - 110,726,999 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,187,175 - 110,190,017 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,540,227 - 105,543,072 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,518,429 - 109,521,288 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl375,643,054 - 75,644,954 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,519,134 - 109,520,846 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,113,705 - 109,116,103 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410109,773,489 - 109,776,334 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110109,787,992 - 109,790,826 (-)NCBI
Celera10104,164,981 - 104,167,826 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Actg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,546,678 - 1,552,105 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,546,678 - 1,549,611 (+)NCBIChiLan1.0ChiLan1.0
ACTG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,096,764 - 98,099,674 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117102,996,909 - 102,999,820 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01775,965,911 - 75,968,822 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,668,221 - 81,671,087 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,668,221 - 81,671,087 (-)Ensemblpanpan1.1panPan2
ACTG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19635,978 - 638,328 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9635,978 - 638,328 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha91,238,649 - 1,241,000 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.091,229,608 - 1,232,436 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,229,663 - 1,232,434 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,254,519 - 1,256,870 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,380,335 - 1,382,686 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,460,286 - 1,462,637 (+)NCBIUU_Cfam_GSD_1.0
ACTG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,313,641 - 1,323,217 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,320,355 - 1,323,219 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,163,186 - 1,166,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACTG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,456,907 - 73,459,777 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607744,839,199 - 44,842,119 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Actg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,496,718 - 10,499,637 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,496,876 - 10,499,737 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005332650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000006858   ⟹   ENSSTOP00000006131
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365945,170,711 - 5,173,235 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000031855   ⟹   ENSSTOP00000026386
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365945,171,417 - 5,173,110 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000032514   ⟹   ENSSTOP00000031489
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365945,172,141 - 5,173,247 (-)Ensembl
RefSeq Acc Id: XM_005332650   ⟹   XP_005332707
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056021,238,788 - 1,241,248 (+)NCBI
SpeTri2.0NW_0049365945,170,711 - 5,173,251 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332707 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006131.3
  ENSSTOP00000026386.1
  ENSSTOP00000031489.1
GenBank Protein KAG3268303 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005332707   ⟸   XM_005332650
- UniProtKB: I3M8N5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000006131   ⟸   ENSSTOT00000006858
Ensembl Acc Id: ENSSTOP00000026386   ⟸   ENSSTOT00000031855
Ensembl Acc Id: ENSSTOP00000031489   ⟸   ENSSTOT00000032514


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006868 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006858.3 UniProtKB/TrEMBL
  ENSSTOT00000031855.1 UniProtKB/TrEMBL
  ENSSTOT00000032514.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.40 UniProtKB/TrEMBL
InterPro Actin UniProtKB/TrEMBL
  Actin/actin-like_CS UniProtKB/TrEMBL
  Actin_CS UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/TrEMBL
NCBI Gene Actg1 ENTREZGENE
PANTHER ACTIN, CYTOPLASMIC 2 UniProtKB/TrEMBL
  PTHR11937 UniProtKB/TrEMBL
Pfam Actin UniProtKB/TrEMBL
PRINTS ACTIN UniProtKB/TrEMBL
PROSITE ACTINS_1 UniProtKB/TrEMBL
  ACTINS_2 UniProtKB/TrEMBL
  ACTINS_ACT_LIKE UniProtKB/TrEMBL
SMART ACTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/TrEMBL
UniProt A0A287CYN9_ICTTR UniProtKB/TrEMBL
  A0A287DD80_ICTTR UniProtKB/TrEMBL
  I3M8N5 ENTREZGENE, UniProtKB/TrEMBL