Zc2hc1c (zinc finger C2HC-type containing 1C) - Rat Genome Database

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Gene: Zc2hc1c (zinc finger C2HC-type containing 1C) Ictidomys tridecemlineatus
Analyze
Symbol: Zc2hc1c
Name: zinc finger C2HC-type containing 1C
RGD ID: 12664190
Description: ENCODES a protein that exhibits metal ion binding (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger C2HC domain-containing protein 1C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864027,848,696 - 27,857,345 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364884,212,624 - 4,219,131 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364884,212,503 - 4,219,314 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Zc2hc1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864027,848,696 - 27,857,345 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364884,212,624 - 4,219,131 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364884,212,503 - 4,219,314 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC2HC1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381475,069,641 - 75,079,988 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1475,064,109 - 75,119,502 (+)EnsemblGRCh38hg38GRCh38
GRCh371475,536,344 - 75,546,691 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361474,606,052 - 74,614,552 (+)NCBINCBI36Build 36hg18NCBI36
Build 341474,606,107 - 74,614,544NCBI
Celera1455,573,960 - 55,582,456 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1455,704,470 - 55,712,966 (+)NCBIHuRef
CHM1_11475,474,072 - 75,482,572 (+)NCBICHM1_1
T2T-CHM13v2.01469,279,032 - 69,289,387 (+)NCBIT2T-CHM13v2.0
Zc2hc1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391285,321,020 - 85,346,132 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1285,321,060 - 85,346,132 (+)EnsemblGRCm39 Ensembl
GRCm381285,274,243 - 85,299,361 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1285,274,286 - 85,299,358 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1285,288,591 - 85,299,358 (+)EnsemblGRCm38mm10GRCm38
MGSCv371286,629,541 - 86,640,308 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361286,177,756 - 86,188,461 (+)NCBIMGSCv36mm8
Celera1286,746,092 - 86,756,859 (+)NCBICelera
Cytogenetic Map12D1- D2NCBI
cM Map1239.63NCBI
Zc2hc1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86110,663,682 - 110,672,606 (+)NCBIGRCr8
mRatBN7.26104,932,631 - 104,941,555 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6104,932,631 - 104,941,554 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6105,102,235 - 105,111,159 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06105,401,107 - 105,410,031 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06104,770,769 - 104,779,689 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06109,110,534 - 109,119,458 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6109,110,534 - 109,119,457 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06116,437,583 - 116,446,512 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46109,333,912 - 109,343,371 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16109,337,367 - 109,346,826 (+)NCBI
Celera6102,755,566 - 102,764,422 (+)NCBICelera
Cytogenetic Map6q31NCBI
Zc2hc1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955523487,564 - 494,537 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955523487,091 - 494,537 (-)NCBIChiLan1.0ChiLan1.0
ZC2HC1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21576,151,412 - 76,160,296 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11475,367,916 - 75,376,800 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01455,621,163 - 55,630,779 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11474,465,002 - 74,474,694 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1474,465,002 - 74,474,694 (+)Ensemblpanpan1.1panPan2
ZC2HC1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1848,169,562 - 48,177,900 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl848,170,112 - 48,215,954 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,853,666 - 47,862,011 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0848,397,173 - 48,405,518 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1848,067,951 - 48,076,294 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0848,089,222 - 48,097,563 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0848,487,919 - 48,496,262 (+)NCBIUU_Cfam_GSD_1.0
ZC2HC1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl798,265,274 - 98,273,351 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1798,265,252 - 98,273,357 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27104,109,337 - 104,117,483 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZC2HC1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12452,283,909 - 52,341,700 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2452,284,827 - 52,292,950 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605340,514,580 - 40,524,768 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zc2hc1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473426,604,773 - 26,611,732 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473426,602,549 - 26,612,649 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000007320   ⟹   ENSSTOP00000006538
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364884,212,624 - 4,219,131 (+)Ensembl
RefSeq Acc Id: XM_005321333   ⟹   XP_005321390
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864027,848,696 - 27,857,310 (-)NCBI
SpeTri2.0NW_0049364884,212,503 - 4,219,314 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040276066   ⟹   XP_040132000
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864027,848,696 - 27,857,345 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005321390 (Get FASTA)   NCBI Sequence Viewer  
  XP_040132000 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006538.3
GenBank Protein KAG3260673 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005321390   ⟸   XM_005321333
- UniProtKB: I3M9H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040132000   ⟸   XM_040276066
- UniProtKB: I3M9H4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000006538   ⟸   ENSSTOT00000007320


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007331 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007320.3 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro ZNF_C2HC_dom_1C UniProtKB/TrEMBL
NCBI Gene Zc2hc1c ENTREZGENE
PANTHER PTHR14649 UniProtKB/TrEMBL
  ZINC FINGER C2HC DOMAIN-CONTAINING PROTEIN 1C UniProtKB/TrEMBL
Pfam zf-C2HC_2 UniProtKB/TrEMBL
UniProt I3M9H4 ENTREZGENE, UniProtKB/TrEMBL