Pygo2 (pygopus family PHD finger 2)

Gene: Pygo2 (pygopus family PHD finger 2) Ictidomys tridecemlineatus

Analyze

Symbol:

Pygo2

Name:

pygopus family PHD finger 2

RGD ID:

12662218

Description:

ENCODES a protein that exhibits chromatin binding (inferred); histone acetyltransferase regulator activity (inferred); histone binding (inferred); INVOLVED IN brain development (ortholog); canonical Wnt signaling pathway (ortholog); developmental growth (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN beta-catenin-TCF complex (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

pygopus family PHD finger 2, transcript variant X1; pygopus family PHD finger 2, transcript variant X2; pygopus family PHD finger 2, transcript variant X3; pygopus homolog 2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	25,476,599 - 25,480,652 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	4,507,925 - 4,511,107 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	4,506,982 - 4,511,044 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 2 (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IEA,ISO)

canonical Wnt signaling pathway (IEA,ISO)

developmental growth (IEA,ISO)

kidney development (IEA,ISO)

lens development in camera-type eye (IEA,ISO)

mammary gland development (IEA,ISO)

regulation of mammary gland epithelial cell proliferation (IEA,ISO)

roof of mouth development (IEA,ISO)

spermatid development (IEA,ISO)

spermatid nucleus differentiation (IEA,ISO)

Wnt signaling pathway (IEA)

Cellular Component

beta-catenin-TCF complex (IEA)

nucleus (IEA)

Molecular Function

chromatin binding (IEA)

histone acetyltransferase regulator activity (IEA)

histone binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Pygo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	25,476,599 - 25,480,652 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	4,507,925 - 4,511,107 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	4,506,982 - 4,511,044 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PYGO2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	154,957,026 - 154,961,782 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	154,957,026 - 154,963,853 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	154,929,502 - 154,934,258 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	153,196,126 - 153,200,882 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	151,742,575 - 151,747,331	NCBI
Celera	1	128,000,527 - 128,005,283 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	126,291,247 - 126,296,003 (-)	NCBI		HuRef
CHM1_1	1	156,325,877 - 156,330,632 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	154,096,387 - 154,101,143 (-)	NCBI		T2T-CHM13v2.0

Pygo2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	89,337,521 - 89,342,438 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	89,337,521 - 89,342,435 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	89,430,114 - 89,435,131 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	89,430,214 - 89,435,128 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	89,234,759 - 89,239,050 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	89,516,141 - 89,521,061 (+)	NCBI		MGSCv36	mm8
Celera	3	89,465,970 - 89,470,261 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.12	NCBI

Pygo2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	177,147,407 - 177,152,476 (+)	NCBI		GRCr8
mRatBN7.2	2	174,849,670 - 174,854,758 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	174,849,936 - 174,854,758 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	181,995,576 - 182,000,249 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	180,017,959 - 180,022,632 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	174,618,553 - 174,623,231 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	188,757,167 - 188,762,285 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	188,757,489 - 188,762,282 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	208,171,437 - 208,176,567 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	181,628,693 - 181,633,360 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	181,578,648 - 181,582,650 (+)	NCBI
Celera	2	168,790,790 - 168,795,470 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

PYGO2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	94,878,730 - 94,883,453 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	94,611,030 - 94,615,584 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	130,305,547 - 130,310,270 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	133,912,411 - 133,920,308 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	133,912,411 - 133,920,308 (-)	Ensembl	panpan1.1		panPan2

PYGO2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	42,509,760 - 42,513,744 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	42,509,968 - 42,512,091 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,000,993 - 42,004,825 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	42,380,064 - 42,383,893 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	42,379,911 - 42,383,891 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	42,159,756 - 42,163,584 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	42,213,362 - 42,217,193 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	42,496,947 - 42,500,777 (+)	NCBI		UU_Cfam_GSD_1.0

PYGO2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	8,866,928 - 8,871,645 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	8,866,711 - 8,871,770 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	8,201,899 - 8,206,849 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pygo2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	2,521,368 - 2,525,449 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	2,521,230 - 2,525,449 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005331311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013361209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000000053 ⟹ ENSSTOP00000000046

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936580	4,507,925 - 4,511,107 (-)	Ensembl

RefSeq Acc Id:

XM_005331311 ⟹ XP_005331368

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	25,476,600 - 25,480,652 (-)	NCBI
SpeTri2.0	NW_004936580	4,506,982 - 4,511,044 (-)	NCBI

Sequence:

show sequence

CCGGCGGCGAGCGGTGAATCTGGAGCGAGCGCGCAGTTTGCGCTCTGGGAAGGCGCTTCTCCCT
TGCCGCGTCTTCGGCTTGCTGCAGCTCGGGGGCCAGCGCTGTCCGAGGCCCCTTCCCGGCGATG
GTGCAGCCTGAGGGCGCCTCCGCCCCCCTCCGCCGCTGACCCCAGTCCCCCACTCCATGGCCGC
CTCGGCGCCGCCCCCACCGGACAAGCTGGAGGGAGGTGGCGGCCCCGCACCGCCCCCTGCGCCG
CCCAGCACCGGGAGGAAGCAGGGCAAGGCCGGTCTGCAAATGAAGAGCCCAGAAAAGAAGCGAA
GAAAGTCAAATACTCAGGGTCCTGCTTACTCACATCTGACGGAGTTTGCACCACCCCCGACTCC
CATGGTGGATCATCTGGTTGCATCCAACCCTTTTGAGGATGACTTCGGAGCCCCTAAGGTGGGG
GGCGCAGCCCCTCCATTCCTCGGCAGTCCTGTGCCCTTTGGAAGCTTCCGTGTACAAGGGGGCA
TGGCAGGCCAGGTACCCCCAGGCTATGGCACTGGGGGTGGAGGGGGTCCCCAGACACTTCGCCG
ACAACCCCCCCCTTTTCCTCCTAATCCTATGGGACCTGCTTTCAACATGCCCCCCCAGGGCCCT
GGCTACCCACCCCCAGGCAACATGAACTTTCCCAGTCAACCCTTCAGCCAGCCTCTGGGTCAAA
ACTTTAGCCCTCCAGGTGGGCAGATGATGCCAGTGGGGGGATTTGGCACCATGATCTCACCCAC
CATGGGACAGCCTCCCAGAGGGGAGCTGGGCCCTCCTTCTCTCCCCCAGCGTTTTGCTCAGCCA
GGTGTGCCTTTTGGCCCTTCTCCTCTACAGAGACCTGGTCAGGGGCTCCCCAGCCTGCCCCCCA
ATACAAGTCCCTTCCCTGGTCCAGACCCTGGCTTTCCTGGCCCTGGTGGTGAGGATGGGGGGAA
GCCCTTGAATCCACCTGCTCCCACTGCTTTTCCCCAGGAGCCCCACTCGGGCTCGCCAGCTGCT
GCTGTTAATGGGAATCAGCCCAGTTTCCCCCCAAACAGCAGTGGGCGGGGTGGCGGCACTCCGG
ATGCCAACAGCCTAGCACCCCCTGGCAAGGCAGGTGGGGGTTCAGGGCCCCAGCCTCCCCCAGG
CCTGGTGTACCCATGTGGTGCCTGTCGGAGCGAGGTGAATGACGACCAGGATGCTATCTTGTGT
GAGGCCTCCTGCCAGAAGTGGTTCCATCGCGAGTGCACAGGCATGACTGAGAGCGCCTATGGGC
TGCTGACCACCGAGGCCTCTGCTGTCTGGGCCTGTGATCTCTGCCTCAAGACCAAGGAGATCCA
GTCTGTCTACATCCGCGAGGGCATGGGGCAGCTGGTGGCCGCTAATGATGGGTGACACTGGCGA
GGTGGTCCCAGGGAAGTGCACATGTCCCTTCCTGCTCCTCCAGGGTGATTGTCTGGCTCCTGGC
CCTCGTGTCCGCTGGTTCCCCATCCTCACGGAGCAGAAACCTGATGGTTCCTGGGGGCAGAAGA
GCCTGGGTTGCTCACTTTTCTGGAAACAACACATCAAGATCTACGGAGATCCAGGAAACCAAAG
CCCTGCTGAGCGGAGCCAGCTTTTCTTGTGGCTATTAGGAAGCCTAGGGATGTGACTGCAAGAG
AAAAGGGGACAGGAAATTCAGGAGGGCAAGAGTGTCCTGTCTGCCTATGATGGATAACTAACAC
CTGTGCCTGACACCCCTGTTTCGCCCCACAGCTCTAGCCTTAGTTTTTGGAGTGGAGCATTGAA
GGTTTCTGGCTTGAGGAGCCGGTCTCTTCCCATCCCTGCCACAGCCATTTCATGGGCTCTGGGA
GACCTCTTTAGGGAATAAATGGGGATTCCTCCTTTTTTCTACCTTCCCCTTTGCCTCTCTCAGA
CCTGTCCAGCTCCTCCTCCCTCAGCACCAACAGCTTGAATCTCGTTCCCAGCTAGGGCAGTTTC
TTGGTGATTTGGGGCTTCATGACAGTAGGTAAGAGGTGCTGTCAGGACATATCTTCCTCATACC
AAAGTCACTGGTCTCAGCTTCCCATGCTTTTCTCTTAATGACCATATTTTTGCCAAAAATTAAA
AAAAAAAAAATTGGGACACGTGGTCTGAGGGACCAGAATAATTGAAGTCTGGGTTGTCCTGGAG
TCTGGACTCTGTTGGCACCCCTGGCCCACCCTCTGTTGCACATTGAGCCCAGTGCTGTTCTTCA
GCTTTTTGTGCCCTCATACCCCTGCCTCCCTGGTTTGGTTGGAGGAAAGCTTGGAAAGGTACCA
AGACCTTATACCTCATTTCCTCCCGGATAGGAGCATCCTAGTGAGGCCCTGTCACAGCCTTGGG
GGTAGGAGGAGTCAGCAGGATTCTCAATGCCACGGTACTAAAAGGAAGGAGAGCCTGGAAATTT
TTGCTTCTCTCTTTCCTGCTATTAGGTATCATCTTGGGCCTGGTGATCTAGCAGTCCTCACTAG
TCTCAGCCAAAAGTCCTGCACTGGGCTTGTTTTTGTTTTCTTTTTAAAGCACTGCCTGCCAGCC
CTGATCTTGGGGCGTGGTCAGGAGCCCCTCTTGGCTGCTTTTGTTCCTTAACAGCTCCTGTGTG
CATTCCTCAAAAGGGCGGGGAAGGGAGTGTGGTCTGTGGTCTCTAGCCCTCGGGGTGTGGTGGC
AAAGGCTACCTTCTGGTCCCTACTCCCACTTCTCTCTGCTCCCTGCACCTGGAGGGAAGATACT
GCCTGGTGGAGCCCACAGCCTTTGCAGCTATGAGGAAGAGGGTGGGCCTCGGGCTTCTCTAAGC
TGGTGTTCCCCACACCGAAACAGTGGAGGTGGCACCCCAGCTTTGTGTTGTGTTTGTGGTTCTG
TTTGCTTCTCCCCTGTTGCTACTTTTGTATGCCTCCCTCTCCACAGCTGTAAACCACTCCTGGG
GAGTGTAGACGTCACTACTTTTTGGAAGAAAGTGGAGTGGCAGAGATGTGGTCGTGGGGTTTTT
TTGTACGGTTGGGTTAATAAAATGACTTTAAAATCCA

hide sequence

RefSeq Acc Id:

XM_013361209 ⟹ XP_013216663

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	25,476,599 - 25,480,467 (-)	NCBI
SpeTri2.0	NW_004936580	4,506,982 - 4,510,776 (-)	NCBI

Sequence:

show sequence

AGGAAGCAGGGCAAGGCCGGTCTGCAAATGAAGAGCCCAGAAAAGAAGCGAAGAAAGTCAAATA
CTCAGATAAGAAATCTGAGGCTTAAAAAAAGTTAAATACCTACTTCAGGGCCAAAGCTGGGATT
TCTGCTCTCTTTCAAAGCAGTCACGGTGCTGTGATGGCTCTGCTCACCACCCTGTGTTTTTCAG
TTGCATGCTAAGACGCATCTTTATTTTAGACCTGAGCTGGGTCCTGCTTACTCACATCTGACGG
AGTTTGCACCACCCCCGACTCCCATGGTGGATCATCTGGTTGCATCCAACCCTTTTGAGGATGA
CTTCGGAGCCCCTAAGGTGGGGGGCGCAGCCCCTCCATTCCTCGGCAGTCCTGTGCCCTTTGGA
AGCTTCCGTGTACAAGGGGGCATGGCAGGCCAGGTACCCCCAGGCTATGGCACTGGGGGTGGAG
GGGGTCCCCAGACACTTCGCCGACAACCCCCCCCTTTTCCTCCTAATCCTATGGGACCTGCTTT
CAACATGCCCCCCCAGGGCCCTGGCTACCCACCCCCAGGCAACATGAACTTTCCCAGTCAACCC
TTCAGCCAGCCTCTGGGTCAAAACTTTAGCCCTCCAGGTGGGCAGATGATGCCAGTGGGGGGAT
TTGGCACCATGATCTCACCCACCATGGGACAGCCTCCCAGAGGGGAGCTGGGCCCTCCTTCTCT
CCCCCAGCGTTTTGCTCAGCCAGGTGTGCCTTTTGGCCCTTCTCCTCTACAGAGACCTGGTCAG
GGGCTCCCCAGCCTGCCCCCCAATACAAGTCCCTTCCCTGGTCCAGACCCTGGCTTTCCTGGCC
CTGGTGGTGAGGATGGGGGGAAGCCCTTGAATCCACCTGCTCCCACTGCTTTTCCCCAGGAGCC
CCACTCGGGCTCGCCAGCTGCTGCTGTTAATGGGAATCAGCCCAGTTTCCCCCCAAACAGCAGT
GGGCGGGGTGGCGGCACTCCGGATGCCAACAGCCTAGCACCCCCTGGCAAGGCAGGTGGGGGTT
CAGGGCCCCAGCCTCCCCCAGGCCTGGTGTACCCATGTGGTGCCTGTCGGAGCGAGGTGAATGA
CGACCAGGATGCTATCTTGTGTGAGGCCTCCTGCCAGAAGTGGTTCCATCGCGAGTGCACAGGC
ATGACTGAGAGCGCCTATGGGCTGCTGACCACCGAGGCCTCTGCTGTCTGGGCCTGTGATCTCT
GCCTCAAGACCAAGGAGATCCAGTCTGTCTACATCCGCGAGGGCATGGGGCAGCTGGTGGCCGC
TAATGATGGGTGACACTGGCGAGGTGGTCCCAGGGAAGTGCACATGTCCCTTCCTGCTCCTCCA
GGGTGATTGTCTGGCTCCTGGCCCTCGTGTCCGCTGGTTCCCCATCCTCACGGAGCAGAAACCT
GATGGTTCCTGGGGGCAGAAGAGCCTGGGTTGCTCACTTTTCTGGAAACAACACATCAAGATCT
ACGGAGATCCAGGAAACCAAAGCCCTGCTGAGCGGAGCCAGCTTTTCTTGTGGCTATTAGGAAG
CCTAGGGATGTGACTGCAAGAGAAAAGGGGACAGGAAATTCAGGAGGGCAAGAGTGTCCTGTCT
GCCTATGATGGATAACTAACACCTGTGCCTGACACCCCTGTTTCGCCCCACAGCTCTAGCCTTA
GTTTTTGGAGTGGAGCATTGAAGGTTTCTGGCTTGAGGAGCCGGTCTCTTCCCATCCCTGCCAC
AGCCATTTCATGGGCTCTGGGAGACCTCTTTAGGGAATAAATGGGGATTCCTCCTTTTTTCTAC
CTTCCCCTTTGCCTCTCTCAGACCTGTCCAGCTCCTCCTCCCTCAGCACCAACAGCTTGAATCT
CGTTCCCAGCTAGGGCAGTTTCTTGGTGATTTGGGGCTTCATGACAGTAGGTAAGAGGTGCTGT
CAGGACATATCTTCCTCATACCAAAGTCACTGGTCTCAGCTTCCCATGCTTTTCTCTTAATGAC
CATATTTTTGCCAAAAATTAAAAAAAAAAAAATTGGGACACGTGGTCTGAGGGACCAGAATAAT
TGAAGTCTGGGTTGTCCTGGAGTCTGGACTCTGTTGGCACCCCTGGCCCACCCTCTGTTGCACA
TTGAGCCCAGTGCTGTTCTTCAGCTTTTTGTGCCCTCATACCCCTGCCTCCCTGGTTTGGTTGG
AGGAAAGCTTGGAAAGGTACCAAGACCTTATACCTCATTTCCTCCCGGATAGGAGCATCCTAGT
GAGGCCCTGTCACAGCCTTGGGGGTAGGAGGAGTCAGCAGGATTCTCAATGCCACGGTACTAAA
AGGAAGGAGAGCCTGGAAATTTTTGCTTCTCTCTTTCCTGCTATTAGGTATCATCTTGGGCCTG
GTGATCTAGCAGTCCTCACTAGTCTCAGCCAAAAGTCCTGCACTGGGCTTGTTTTTGTTTTCTT
TTTAAAGCACTGCCTGCCAGCCCTGATCTTGGGGCGTGGTCAGGAGCCCCTCTTGGCTGCTTTT
GTTCCTTAACAGCTCCTGTGTGCATTCCTCAAAAGGGCGGGGAAGGGAGTGTGGTCTGTGGTCT
CTAGCCCTCGGGGTGTGGTGGCAAAGGCTACCTTCTGGTCCCTACTCCCACTTCTCTCTGCTCC
CTGCACCTGGAGGGAAGATACTGCCTGGTGGAGCCCACAGCCTTTGCAGCTATGAGGAAGAGGG
TGGGCCTCGGGCTTCTCTAAGCTGGTGTTCCCCACACCGAAACAGTGGAGGTGGCACCCCAGCT
TTGTGTTGTGTTTGTGGTTCTGTTTGCTTCTCCCCTGTTGCTACTTTTGTATGCCTCCCTCTCC
ACAGCTGTAAACCACTCCTGGGGAGTGTAGACGTCACTACTTTTTGGAAGAAAGTGGAGTGGCA
GAGATGTGGTCGTGGGGTTTTTTTGTACGGTTGGGTTAATAAAATGACTTTAAAATCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005331368	(Get FASTA)	NCBI Sequence Viewer
	XP_013216663	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000046.2
GenBank Protein	KAG3281700	(Get FASTA)	NCBI Sequence Viewer
	KAG3281701	(Get FASTA)	NCBI Sequence Viewer
	KAG3281702	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005331368 ⟸ XM_005331311
- Peptide Label:	isoform X1
- UniProtKB:	I3LVW8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPP PTPMVDHLVASNPFEDDFGAPKVGGAAPPFLGSPVPFGSFRVQGGMAGQVPPGYGTGGGGGPQT LRRQPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFSQPLGQNFSPPGGQMMPVGGFGTMI SPTMGQPPRGELGPPSLPQRFAQPGVPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGED GGKPLNPPAPTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQP PPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK EIQSVYIREGMGQLVAANDG hide sequence

RefSeq Acc Id:

XP_013216663 ⟸ XM_013361209

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVDHLVASNPFEDDFGAPKVGGAAPPFLGSPVPFGSFRVQGGMAGQVPPGYGTGGGGGPQTLRR
QPPPFPPNPMGPAFNMPPQGPGYPPPGNMNFPSQPFSQPLGQNFSPPGGQMMPVGGFGTMISPT
MGQPPRGELGPPSLPQRFAQPGVPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGK
PLNPPAPTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPG
LVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEIQ
SVYIREGMGQLVAANDG

hide sequence

RefSeq Acc Id:

ENSSTOP00000000046 ⟸ ENSSTOT00000000053

Protein Domains

PHD-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000000053	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000000053.3	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
InterPro	Zinc_finger_PHD-type_CS	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
NCBI Gene	Pygo2	ENTREZGENE
PANTHER	PYGOPUS	UniProtKB/TrEMBL
	PYGOPUS HOMOLOG 2	UniProtKB/TrEMBL
Pfam	PHD	UniProtKB/TrEMBL
PROSITE	ZF_PHD_1	UniProtKB/TrEMBL
	ZF_PHD_2	UniProtKB/TrEMBL
SMART	PHD	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57903	UniProtKB/TrEMBL
UniProt	I3LVW8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar