Ndufa3 (NADH:ubiquinone oxidoreductase subunit A3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ndufa3 (NADH:ubiquinone oxidoreductase subunit A3) Ictidomys tridecemlineatus
Analyze
Symbol: Ndufa3
Name: NADH:ubiquinone oxidoreductase subunit A3
RGD ID: 12660672
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,702,862 - 2,704,933 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994232,936 - 234,939 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994232,913 - 234,939 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ndufa3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,702,862 - 2,704,933 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994232,936 - 234,939 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994232,913 - 234,939 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,102,855 - 54,107,568 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,102,728 - 54,109,257 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,606,163 - 54,610,875 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,297,972 - 59,302,080 (+)NCBINCBI36Build 36hg18NCBI36
Build 341959,297,971 - 59,302,078NCBI
Celera1951,645,840 - 51,649,962 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,922,024 - 50,926,151 (+)NCBIHuRef
CHM1_11954,607,871 - 54,611,993 (+)NCBICHM1_1
T2T-CHM13v2.01957,180,922 - 57,186,265 (+)NCBIT2T-CHM13v2.0
Ndufa3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,620,372 - 3,623,162 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,620,372 - 3,623,326 (+)EnsemblGRCm39 Ensembl
GRCm3873,617,347 - 3,620,165 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,617,373 - 3,620,327 (+)EnsemblGRCm38mm10GRCm38
MGSCv3773,568,975 - 3,571,763 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,220,460 - 3,223,248 (+)NCBIMGSCv36mm8
Celera73,529,176 - 3,531,956 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.08NCBI
Ndufa3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,512,928 - 74,515,558 (-)NCBIGRCr8
mRatBN7.2165,597,567 - 65,600,197 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,597,578 - 65,600,235 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,045,692 - 71,048,322 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,468,668 - 79,471,298 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0172,795,531 - 72,798,151 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,172,462 - 64,175,174 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,172,540 - 64,175,099 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,164,744 - 63,167,429 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,910,487 - 63,913,120 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera163,322,486 - 63,325,198 (-)NCBICelera
Cytogenetic Map1q12NCBI
Ndufa3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955604139,844 - 141,578 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955604139,844 - 141,578 (-)NCBIChiLan1.0ChiLan1.0
NDUFA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,106,633 - 60,113,906 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,028,541 - 62,035,997 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,034,675 - 51,041,025 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,878,237 - 59,885,049 (+)NCBIpanpan1.1PanPan1.1panPan2
NDUFA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,098,639 - 103,101,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,160,460 - 103,163,047 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,743,822 - 103,746,409 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,743,825 - 103,746,061 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,381,701 - 103,384,288 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,143,107 - 103,145,694 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,857,234 - 103,859,821 (-)NCBIUU_Cfam_GSD_1.0
NDUFA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1656,018,221 - 56,021,318 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,196,363 - 53,199,447 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,779,015 - 46,782,564 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607326,867,931 - 26,871,530 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufa3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,459,430 - 2,461,527 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,459,430 - 2,461,590 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005342276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000029533   ⟹   ENSSTOP00000020524
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936994232,936 - 234,939 (+)Ensembl
RefSeq Acc Id: XM_005342276   ⟹   XP_005342333
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093492,702,862 - 2,704,933 (-)NCBI
SpeTri2.0NW_004936994232,913 - 234,939 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005342333 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020524.2
GenBank Protein KAG3255678 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005342333   ⟸   XM_005342276
- UniProtKB: I3N828 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000020524   ⟸   ENSSTOT00000029533


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025377 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029533.2 UniProtKB/TrEMBL
InterPro NDUFA3 UniProtKB/TrEMBL
NCBI Gene Ndufa3 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 3 UniProtKB/TrEMBL
  PTHR15221 UniProtKB/TrEMBL
Pfam NADHdh_A3 UniProtKB/TrEMBL
UniProt I3N828 ENTREZGENE, UniProtKB/TrEMBL