LOC101964358 (attractin) - Rat Genome Database

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Gene: LOC101964358 (attractin) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101964358
Name: attractin
RGD ID: 12659471
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); FOUND IN Golgi apparatus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Atrn
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640166,719,388 - 166,855,992 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648515,150,156 - 15,287,334 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005320520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005320520   ⟹   XP_005320577
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640166,719,388 - 166,855,992 (-)NCBI
SpeTri2.0NW_00493648515,150,156 - 15,287,334 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320577 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000689.3
GenBank Protein KAG3262911 (Get FASTA)   NCBI Sequence Viewer  
  KAG3262912 (Get FASTA)   NCBI Sequence Viewer  
  KAG3262913 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005320577   ⟸   XM_005320520
- UniProtKB: I3LXB2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
C-type lectin   CUB   EGF-like   Laminin EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000760 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000768.3 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.80 UniProtKB/TrEMBL
  2.60.120.290 UniProtKB/TrEMBL
  3.10.100.10 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro Attractin-like_CTLD UniProtKB/TrEMBL
  C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  CUB_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC101964358 ENTREZGENE
PANTHER ATTRACTIN UniProtKB/TrEMBL
  LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
  Kelch_5 UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF117281 UniProtKB/TrEMBL
  SSF49854 UniProtKB/TrEMBL
  SSF56436 UniProtKB/TrEMBL
UniProt I3LXB2 ENTREZGENE, UniProtKB/TrEMBL