Arhgap9 (Rho GTPase activating protein 9) - Rat Genome Database

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Gene: Arhgap9 (Rho GTPase activating protein 9) Ictidomys tridecemlineatus
Analyze
Symbol: Arhgap9
Name: Rho GTPase activating protein 9
RGD ID: 12658853
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); phosphatidylinositol-3,4,5-trisphosphate binding (inferred); INVOLVED IN signal transduction (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2U (ortholog); coronary artery vasospasm (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Rho GTPase activating protein 9, transcript variant X1; Rho GTPase activating protein 9, transcript variant X2; rho GTPase-activating protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,225,877 - 57,240,459 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,630,029 - 1,638,571 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,629,814 - 1,637,535 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Arhgap9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,225,877 - 57,240,459 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,630,029 - 1,638,571 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,629,814 - 1,637,535 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGAP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,472,269 - 57,488,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,472,264 - 57,488,814 (-)EnsemblGRCh38hg38GRCh38
GRCh371257,866,052 - 57,882,607 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,152,305 - 56,159,900 (-)NCBINCBI36Build 36hg18NCBI36
Build 341256,152,313 - 56,168,864NCBI
Celera1257,520,025 - 57,527,620 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,903,912 - 54,911,506 (-)NCBIHuRef
CHM1_11257,834,151 - 57,841,746 (-)NCBICHM1_1
T2T-CHM13v2.01257,440,558 - 57,457,116 (-)NCBIT2T-CHM13v2.0
Arhgap9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,157,829 - 127,165,816 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,157,833 - 127,165,812 (+)EnsemblGRCm39 Ensembl
GRCm3810127,321,913 - 127,329,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,321,964 - 127,329,943 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710126,760,783 - 126,766,999 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610126,760,783 - 126,766,999 (+)NCBIMGSCv36mm8
Celera10129,716,377 - 129,722,546 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
Arhgap9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,034,023 - 65,042,336 (+)NCBIGRCr8
mRatBN7.2763,148,573 - 63,157,025 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,148,900 - 63,157,524 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,038,168 - 65,046,289 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,240,592 - 67,248,713 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,041,922 - 67,050,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,612,650 - 70,620,900 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,612,103 - 70,620,890 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,786,981 - 70,795,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,280,267 - 67,288,390 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,302,835 - 67,309,117 (+)NCBI
Celera760,289,141 - 60,297,261 (+)NCBICelera
Cytogenetic Map7q22NCBI
Arhgap9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,193,816 - 5,199,067 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,193,708 - 5,201,625 (-)NCBIChiLan1.0ChiLan1.0
ARHGAP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21036,855,544 - 36,868,021 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11236,849,019 - 36,864,789 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,445,732 - 31,453,763 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,701,480 - 31,710,064 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,693,309 - 31,710,064 (+)Ensemblpanpan1.1panPan2
ARHGAP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,576,114 - 1,583,611 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,639,366 - 1,652,757 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,585,166 - 1,598,560 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,585,194 - 1,592,651 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,563,236 - 1,576,619 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,804,725 - 1,818,112 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,930,089 - 1,943,488 (-)NCBIUU_Cfam_GSD_1.0
ARHGAP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,747,339 - 22,762,049 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,747,346 - 22,762,179 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,812,589 - 24,835,154 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGAP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,384,335 - 53,398,445 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,384,449 - 53,396,083 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037192,565,217 - 192,582,694 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgap9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,475,609 - 10,483,043 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,461,014 - 10,483,148 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000001112   ⟹   ENSSTOP00000000992
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,630,029 - 1,638,571 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000036790   ⟹   ENSSTOP00000029648
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,630,819 - 1,638,571 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041332   ⟹   ENSSTOP00000029547
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366461,630,377 - 1,634,803 (-)Ensembl
RefSeq Acc Id: XM_005335673   ⟹   XP_005335730
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,232,699 - 57,240,459 (+)NCBI
SpeTri2.0NW_0049366461,629,814 - 1,637,535 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040280428   ⟹   XP_040136362
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,232,698 - 57,240,459 (+)NCBI
RefSeq Acc Id: XM_040280429   ⟹   XP_040136363
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,225,877 - 57,240,459 (+)NCBI
RefSeq Acc Id: XM_040280430   ⟹   XP_040136364
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494557,234,821 - 57,240,459 (+)NCBI
RefSeq Acc Id: XP_005335730   ⟸   XM_005335673
- Peptide Label: isoform X2
- UniProtKB: I3LXZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040136363   ⟸   XM_040280429
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040136362   ⟸   XM_040280428
- Peptide Label: isoform X1
- UniProtKB: I3LXZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040136364   ⟸   XM_040280430
- Peptide Label: isoform X4
RefSeq Acc Id: ENSSTOP00000029648   ⟸   ENSSTOT00000036790
RefSeq Acc Id: ENSSTOP00000000992   ⟸   ENSSTOT00000001112
RefSeq Acc Id: ENSSTOP00000029547   ⟸   ENSSTOT00000041332
Protein Domains
PH   Rho-GAP   SH3   WW


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001107 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001112.3 UniProtKB/TrEMBL
  ENSSTOT00000036790.1 UniProtKB/TrEMBL
  ENSSTOT00000041332.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/TrEMBL
  2.20.70.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro ARHGAP9_SH3 UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  WW_dom UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/TrEMBL
NCBI Gene Arhgap9 ENTREZGENE
PANTHER RHO GTPASE-ACTIVATING PROTEIN 9 UniProtKB/TrEMBL
  RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  RHOGAP UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/TrEMBL
SMART RhoGAP UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF48350 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
  SSF51045 UniProtKB/TrEMBL
UniProt A0A287D7J5_ICTTR UniProtKB/TrEMBL
  A0A287D7Y7_ICTTR UniProtKB/TrEMBL
  I3LXZ8 ENTREZGENE, UniProtKB/TrEMBL