Ak4 (adenylate kinase 4) - Rat Genome Database

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Gene: Ak4 (adenylate kinase 4) Ictidomys tridecemlineatus
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Symbol: Ak4
Name: adenylate kinase 4
RGD ID: 12657077
Description: ENCODES a protein that exhibits adenylate kinase activity (ortholog); nucleoside triphosphate adenylate kinase activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); liver development (ortholog); regulation of oxidative phosphorylation (ortholog); PARTICIPATES IN de novo purine biosynthetic pathway; ASSOCIATED WITH acute kidney tubular necrosis (ortholog); Chemical and Drug Induced Liver Injury (ortholog); congenital disorder of glycosylation It (ortholog); FOUND IN mitochondrial matrix (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adenylate kinase 4, mitochondrial; adenylate kinase 4, transcript variant X1; adenylate kinase 4, transcript variant X2; adenylate kinase 4, transcript variant X3; adenylate kinase 4, transcript variant X4; adenylate kinase 4, transcript variant X5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505878,277,939 - 78,342,917 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366922,593,409 - 2,654,583 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ak4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505878,277,939 - 78,342,917 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366922,593,409 - 2,654,583 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AK4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38165,147,552 - 65,232,145 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl165,147,549 - 65,232,145 (+)EnsemblGRCh38hg38GRCh38
GRCh37165,613,235 - 65,697,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36165,385,820 - 65,465,765 (+)NCBINCBI36Build 36hg18NCBI36
Celera163,903,944 - 63,988,555 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef163,722,163 - 63,806,551 (+)NCBIHuRef
CHM1_1165,729,523 - 65,814,075 (+)NCBICHM1_1
T2T-CHM13v2.0165,025,531 - 65,110,134 (+)NCBIT2T-CHM13v2.0
Ak4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394101,273,675 - 101,324,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4101,276,474 - 101,324,192 (+)EnsemblGRCm39 Ensembl
GRCm384101,416,478 - 101,467,771 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4101,419,277 - 101,466,995 (+)EnsemblGRCm38mm10GRCm38
MGSCv374101,091,894 - 101,140,376 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364100,917,690 - 100,964,927 (+)NCBIMGSCv36mm8
Celera499,759,270 - 99,808,044 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map446.84NCBI
Ak4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85121,154,565 - 121,214,403 (+)NCBIGRCr8
mRatBN7.25116,039,222 - 116,099,064 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5116,039,616 - 116,098,618 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5118,605,105 - 118,655,660 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05120,330,473 - 120,381,010 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05120,381,768 - 120,432,320 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05120,250,318 - 120,309,153 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5120,250,616 - 120,305,897 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05124,129,933 - 124,189,606 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45122,062,872 - 122,119,335 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15122,068,045 - 122,127,564 (+)NCBI
Celera5114,576,993 - 114,626,919 (+)NCBICelera
Cytogenetic Map5q33NCBI
Ak4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542325,395,836 - 25,427,474 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542325,395,086 - 25,402,324 (-)NCBIChiLan1.0ChiLan1.0
AK4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21161,630,069 - 161,714,696 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11160,780,900 - 160,865,513 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0164,394,898 - 64,479,536 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1166,283,102 - 66,367,146 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl166,283,102 - 66,361,230 (+)Ensemblpanpan1.1panPan2
AK4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1545,055,294 - 45,119,595 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl544,884,283 - 45,120,203 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha545,107,227 - 45,176,810 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0545,230,958 - 45,300,604 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl545,235,891 - 45,300,627 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1545,196,507 - 45,265,914 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0545,140,926 - 45,210,260 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0545,392,014 - 45,461,310 (-)NCBIUU_Cfam_GSD_1.0
AK4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6147,177,029 - 147,257,814 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16147,177,029 - 147,257,799 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26135,587,473 - 135,663,801 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AK4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12067,840,572 - 67,924,691 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603349,603,493 - 49,717,228 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ak4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474229,547,237 - 29,574,160 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005337722   ⟹   XP_005337779
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505878,277,947 - 78,342,917 (+)NCBI
SpeTri2.0NW_0049366922,593,409 - 2,654,583 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021734850   ⟹   XP_021590525
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505878,277,939 - 78,342,917 (+)NCBI
SpeTri2.0NW_0049366922,593,741 - 2,654,583 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040288787   ⟹   XP_040144721
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505878,277,942 - 78,342,917 (+)NCBI
RefSeq Acc Id: XM_040288788   ⟹   XP_040144722
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505878,277,954 - 78,342,917 (+)NCBI
RefSeq Acc Id: XP_005337779   ⟸   XM_005337722
- Peptide Label: isoform X1
- UniProtKB: I3MRY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021590525   ⟸   XM_021734850
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040144721   ⟸   XM_040288787
- Peptide Label: isoform X1
- UniProtKB: I3MRY0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144722   ⟸   XM_040288788
- Peptide Label: isoform X3

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023008 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028323.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Adenyl_kin_sub UniProtKB/TrEMBL
  Adenylat/UMP-CMP_kin UniProtKB/TrEMBL
  Adenylat_kinase_CS UniProtKB/TrEMBL
  Adenylate_kinase_lid-dom UniProtKB/TrEMBL
  ADK_active_lid_dom_sf UniProtKB/TrEMBL
  AK3/Ak4_mitochondrial UniProtKB/TrEMBL
  AK4_mitochondrial UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Ak4 ENTREZGENE
PANTHER PTHR23359 UniProtKB/TrEMBL
Pfam ADK UniProtKB/TrEMBL
  ADK_lid UniProtKB/TrEMBL
PRINTS ADENYLTKNASE UniProtKB/TrEMBL
PROSITE ADENYLATE_KINASE UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF57774 UniProtKB/TrEMBL
UniProt I3MRY0 ENTREZGENE, UniProtKB/TrEMBL