Coq7 (coenzyme Q7, hydroxylase) - Rat Genome Database

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Gene: Coq7 (coenzyme Q7, hydroxylase) Ictidomys tridecemlineatus
Analyze
Symbol: Coq7
Name: coenzyme Q7, hydroxylase
RGD ID: 12656994
Description: ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); determination of adult lifespan (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN ubiquinone biosynthetic pathway; ASSOCIATED WITH autosomal recessive distal hereditary motor neuronopathy 9 (ortholog); Cachexia (ortholog); Carcinoma, Lewis Lung (ortholog); FOUND IN ubiquinone biosynthesis complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 5-demethoxyubiquinone hydroxylase, mitochondrial; ubiquinone biosynthesis protein COQ7 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344116,938,126 - 116,946,011 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365015,034,224 - 5,043,909 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365015,035,986 - 5,043,864 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Coq7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344116,938,126 - 116,946,011 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365015,034,224 - 5,043,909 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365015,035,986 - 5,043,864 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COQ7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381619,067,614 - 19,083,097 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1619,067,614 - 19,080,095 (+)EnsemblGRCh38hg38GRCh38
GRCh371619,078,936 - 19,091,417 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361618,986,428 - 18,998,855 (+)NCBINCBI36Build 36hg18NCBI36
Build 341618,986,427 - 18,998,851NCBI
Celera1618,226,796 - 18,239,311 (+)NCBICelera
Cytogenetic Map16p12.3NCBI
HuRef1617,616,329 - 17,628,854 (+)NCBIHuRef
CHM1_11619,166,175 - 19,178,695 (+)NCBICHM1_1
T2T-CHM13v2.01618,998,449 - 19,010,962 (+)NCBIT2T-CHM13v2.0
Coq7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397118,108,881 - 118,132,529 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7118,108,882 - 118,132,579 (-)EnsemblGRCm39 Ensembl
GRCm387118,509,659 - 118,533,356 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7118,509,659 - 118,533,356 (-)EnsemblGRCm38mm10GRCm38
MGSCv377125,668,576 - 125,676,827 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367118,316,211 - 118,324,462 (-)NCBIMGSCv36mm8
Celera7118,482,825 - 118,491,101 (-)NCBICelera
Cytogenetic Map7F1NCBI
cM Map763.44NCBI
Coq7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,270,570 - 182,285,959 (-)NCBIGRCr8
mRatBN7.21172,836,359 - 172,851,173 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1172,835,188 - 172,851,158 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1181,148,907 - 181,163,710 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01188,335,228 - 188,350,029 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,065,025 - 181,079,833 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,176,060 - 188,190,874 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,174,874 - 188,190,860 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01195,122,741 - 195,137,551 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,722,271 - 176,746,436 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11176,880,883 - 176,885,682 (-)NCBI
Celera1170,616,870 - 170,628,144 (-)NCBICelera
Cytogenetic Map1q35NCBI
Coq7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554423,025,484 - 3,033,582 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554423,026,458 - 3,033,582 (-)NCBIChiLan1.0ChiLan1.0
COQ7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21820,331,589 - 20,343,307 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11624,855,106 - 24,870,763 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01619,229,649 - 19,242,131 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11619,172,134 - 19,184,158 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1619,172,135 - 19,184,158 (+)Ensemblpanpan1.1panPan2
COQ7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1625,912,936 - 25,922,123 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl625,912,954 - 25,929,655 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha627,278,749 - 27,291,703 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0626,062,369 - 26,085,094 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl626,067,721 - 26,076,911 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1625,862,208 - 25,885,081 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0625,756,684 - 25,779,046 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0626,146,453 - 26,169,135 (+)NCBIUU_Cfam_GSD_1.0
COQ7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl326,366,000 - 26,373,584 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1326,366,006 - 26,373,604 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
COQ7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1517,351,429 - 17,362,305 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl517,351,506 - 17,362,916 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606812,568,477 - 12,580,312 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Coq7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247822,682,486 - 2,689,661 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247822,682,489 - 2,689,662 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000003894   ⟹   ENSSTOP00000003490
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365015,034,224 - 5,043,909 (-)Ensembl
RefSeq Acc Id: XM_005323708   ⟹   XP_005323765
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344116,938,126 - 116,946,011 (-)NCBI
SpeTri2.0NW_0049365015,035,986 - 5,043,864 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040277485   ⟹   XP_040133419
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344116,938,126 - 116,945,770 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005323765 (Get FASTA)   NCBI Sequence Viewer  
  XP_040133419 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003490.2
GenBank Protein KAG3259409 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005323765   ⟸   XM_005323708
- Peptide Label: isoform X1
- UniProtKB: I3M379 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040133419   ⟸   XM_040277485
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000003490   ⟸   ENSSTOT00000003894


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003901 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003894.3 UniProtKB/TrEMBL
InterPro Ferritin-like_SF UniProtKB/TrEMBL
  Ubq_synth_Coq7 UniProtKB/TrEMBL
NCBI Gene Coq7 ENTREZGENE
PANTHER 5-DEMETHOXYUBIQUINONE HYDROXYLASE, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR11237 UniProtKB/TrEMBL
Pfam COQ7 UniProtKB/TrEMBL
Superfamily-SCOP SSF47240 UniProtKB/TrEMBL
UniProt I3M379 ENTREZGENE, UniProtKB/TrEMBL