Atp2a1 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1) - Rat Genome Database

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Gene: Atp2a1 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1) Ictidomys tridecemlineatus
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Symbol: Atp2a1
Name: ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
RGD ID: 12656882
Description: ENCODES a protein that exhibits ATP binding (ortholog); calcium ion binding (ortholog); calcium-dependent ATPase activity (ortholog); INVOLVED IN calcium ion transport (ortholog); negative regulation of striated muscle contraction (ortholog); regulation of striated muscle contraction (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH 16p11.2 Deletion Syndrome (ortholog); Alcohol Myopathy (ortholog); Brody myopathy (ortholog); FOUND IN H zone (ortholog); I band (ortholog); sarcoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, transcript variant X1; ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, transcript variant X2; ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, transcript variant X3; sarcoplasmic/endoplasmic reticulum calcium ATPase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,720,441 - 123,738,330 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,816,585 - 11,836,231 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493650111,818,301 - 11,836,221 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Atp2a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,720,441 - 123,738,330 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,816,585 - 11,836,231 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493650111,818,301 - 11,836,221 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP2A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,878,488 - 28,904,466 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1628,878,405 - 28,904,466 (+)EnsemblGRCh38hg38GRCh38
GRCh371628,889,809 - 28,915,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,797,310 - 28,823,331 (+)NCBINCBI36Build 36hg18NCBI36
Build 341628,797,309 - 28,823,331NCBI
Celera1627,844,578 - 27,896,644 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1626,757,144 - 26,783,172 (+)NCBIHuRef
CHM1_11629,901,645 - 29,927,644 (+)NCBICHM1_1
T2T-CHM13v2.01629,158,988 - 29,184,960 (+)NCBIT2T-CHM13v2.0
Atp2a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,045,032 - 126,062,245 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,045,030 - 126,062,280 (-)EnsemblGRCm39 Ensembl
GRCm387126,445,858 - 126,463,103 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,445,858 - 126,463,108 (-)EnsemblGRCm38mm10GRCm38
MGSCv377133,589,374 - 133,606,587 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,237,008 - 126,254,221 (-)NCBIMGSCv36mm8
Celera7126,298,414 - 126,315,638 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.04NCBI
Atp2a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21181,026,606 - 181,044,859 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,026,608 - 181,044,838 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,357,175 - 189,375,401 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01196,543,255 - 196,561,480 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01189,231,158 - 189,249,385 (-)NCBIRnor_WKY
Rnor_6.01197,855,912 - 197,875,038 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01204,836,393 - 204,854,172 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1178,686,581 - 178,704,188 (-)NCBICelera
Cytogenetic Map1q36NCBI
Atp2a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554936,559,995 - 6,578,461 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554936,559,995 - 6,578,461 (-)NCBIChiLan1.0ChiLan1.0
ATP2A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11636,674,275 - 36,700,816 (-)NCBINHGRI_mPanPan1
PanPan1.11629,265,107 - 29,274,924 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1629,265,516 - 29,290,807 (+)NCBIpanpan1.1panPan2
PanPan1.1 Ensembl1629,265,516 - 29,290,807 (+)Ensemblpanpan1.1panPan2
ATP2A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,384,981 - 18,400,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,385,007 - 18,400,036 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,963,150 - 19,978,140 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,520,899 - 18,535,902 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,520,922 - 18,535,900 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,320,443 - 18,335,447 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,235,008 - 18,250,003 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,551,136 - 18,566,380 (+)NCBIUU_Cfam_GSD_1.0
ATP2A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,545,071 - 18,568,310 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,545,064 - 18,568,312 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,733,279 - 18,753,571 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP2A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,165,370 - 26,196,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl526,164,205 - 26,193,172 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660683,421,323 - 3,459,785 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp2a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,867,230 - 12,883,685 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,867,404 - 12,883,685 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000006820   ⟹   ENSSTOP00000006098
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650111,819,271 - 11,835,998 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035661   ⟹   ENSSTOP00000029925
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650111,816,585 - 11,836,231 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041461   ⟹   ENSSTOP00000028590
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650111,818,213 - 11,836,231 (-)Ensembl
RefSeq Acc Id: XM_005323786   ⟹   XP_005323843
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344123,720,445 - 123,738,330 (-)NCBI
SpeTri2.0NW_00493650111,818,305 - 11,836,221 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005323787   ⟹   XP_005323844
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344123,720,441 - 123,738,330 (-)NCBI
SpeTri2.0NW_00493650111,818,301 - 11,836,221 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040277305   ⟹   XP_040133239
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344123,720,445 - 123,736,822 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005323844   ⟸   XM_005323787
- Peptide Label: isoform X2
- UniProtKB: A0A287D8P0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005323843   ⟸   XM_005323786
- Peptide Label: isoform X1
- UniProtKB: A0A287D504 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040133239   ⟸   XM_040277305
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000006098   ⟸   ENSSTOT00000006820
RefSeq Acc Id: ENSSTOP00000029925   ⟸   ENSSTOT00000035661
RefSeq Acc Id: ENSSTOP00000028590   ⟸   ENSSTOT00000041461
Protein Domains
Cation-transporting P-type ATPase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006806 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000006098.3 UniProtKB/TrEMBL
  ENSSTOP00000028590 ENTREZGENE
  ENSSTOP00000028590.1 UniProtKB/TrEMBL
  ENSSTOP00000029925 ENTREZGENE
  ENSSTOP00000029925.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006820.3 UniProtKB/TrEMBL
  ENSSTOT00000035661.1 UniProtKB/TrEMBL
  ENSSTOT00000041461.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_cation-transptr_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IIA UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene Atp2a1 ENTREZGENE
PANTHER CALCIUM-TRANSPORTING ATPASE UniProtKB/TrEMBL
  SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1 UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  Cation_ATPase_C UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  Hydrolase_3 UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
  HATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
TIGRFAMs ATPase-IIA1_Ca UniProtKB/TrEMBL
  ATPase_P-type UniProtKB/TrEMBL
UniProt A0A287D504 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D8P0 ENTREZGENE, UniProtKB/TrEMBL
  I3M8L3_ICTTR UniProtKB/TrEMBL