Adig (adipogenin) - Rat Genome Database

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Gene: Adig (adipogenin) Ictidomys tridecemlineatus
Analyze
Symbol: Adig
Name: adipogenin
RGD ID: 12656667
Description: INVOLVED IN positive regulation of fat cell differentiation (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); lipid droplet (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640175,947,396 - 175,953,524 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365612,798,158 - 2,801,985 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365612,797,758 - 2,802,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
lipid droplet  (IEA)
membrane  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Adig
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640175,947,396 - 175,953,524 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365612,798,158 - 2,801,985 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365612,797,758 - 2,802,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADIG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382038,581,197 - 38,588,463 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2038,581,195 - 38,588,463 (+)EnsemblGRCh38hg38GRCh38
GRCh372037,209,840 - 37,217,106 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362036,643,252 - 36,650,518 (+)NCBINCBI36Build 36hg18NCBI36
Celera2033,920,630 - 33,927,890 (+)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2033,946,688 - 33,953,948 (+)NCBIHuRef
CHM1_12037,114,048 - 37,121,308 (+)NCBICHM1_1
T2T-CHM13v2.02040,310,849 - 40,318,109 (+)NCBIT2T-CHM13v2.0
Adig
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392158,344,532 - 158,350,118 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2158,344,532 - 158,350,118 (+)EnsemblGRCm39 Ensembl
GRCm382158,502,612 - 158,508,198 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2158,502,612 - 158,508,198 (+)EnsemblGRCm38mm10GRCm38
MGSCv372158,328,348 - 158,333,934 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362158,194,053 - 158,199,639 (+)NCBIMGSCv36mm8
Celera2164,440,031 - 164,445,612 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map278.72NCBI
Adig
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,574,963 - 167,580,296 (+)NCBIGRCr8
mRatBN7.23147,155,079 - 147,160,412 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3147,154,097 - 147,160,490 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl3147,154,097 - 147,160,490 (+)NCBImRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3150,987,048 - 150,992,774 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03159,486,351 - 159,492,077 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03157,221,725 - 157,227,468 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03153,946,828 - 153,952,269 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3153,949,215 - 153,952,108 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3154,986,059 - 154,988,952 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03161,639,906 - 161,645,288 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43149,218,511 - 149,223,790 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3145,855,708 - 145,860,987 (+)NCBICelera
Cytogenetic Map3q42NCBI
Adig
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544518,134,092 - 18,138,161 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544518,134,107 - 18,138,198 (-)NCBIChiLan1.0ChiLan1.0
LOC100969235
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22144,306,400 - 44,313,798 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12044,299,534 - 44,306,896 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02034,905,712 - 34,913,078 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12036,014,031 - 36,021,281 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2036,014,078 - 36,018,939 (+)Ensemblpanpan1.1panPan2
ADIG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12427,034,578 - 27,042,180 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2426,680,064 - 26,687,313 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02427,730,762 - 27,738,020 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2427,730,833 - 27,734,980 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12427,004,498 - 27,011,740 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02427,112,807 - 27,120,063 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02427,600,848 - 27,608,107 (+)NCBIUU_Cfam_GSD_1.0
ADIG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1741,609,269 - 41,612,711 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11741,609,367 - 41,631,142 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21747,080,560 - 47,117,841 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADIG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1225,167,171 - 25,175,230 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605074,006,995 - 74,013,463 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adig
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248421,060,352 - 1,065,684 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000035026   ⟹   ENSSTOP00000026822
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365612,798,158 - 2,801,985 (-)Ensembl
RefSeq Acc Id: XM_021729499   ⟹   XP_021585174
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640175,947,402 - 175,953,524 (+)NCBI
SpeTri2.0NW_0049365612,797,758 - 2,802,042 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275799   ⟹   XP_040131733
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640175,947,396 - 175,953,524 (+)NCBI
RefSeq Acc Id: XM_040275800   ⟹   XP_040131734
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640175,947,401 - 175,953,524 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021585174 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131733 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131734 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000026822.1
GenBank Protein KAG3263264 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021585174   ⟸   XM_021729499
- Peptide Label: isoform X1
- UniProtKB: A0A287CZT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131733   ⟸   XM_040275799
- Peptide Label: isoform X2
- UniProtKB: A0A287CZT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131734   ⟸   XM_040275800
- Peptide Label: isoform X3
- UniProtKB: A0A287CZT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000026822   ⟸   ENSSTOT00000035026


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000029991 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000035026.1 UniProtKB/TrEMBL
InterPro Adipogenin UniProtKB/TrEMBL
NCBI Gene Adig ENTREZGENE
PANTHER ADIPOGENIN UniProtKB/TrEMBL
  PTHR38499 UniProtKB/TrEMBL
Pfam Adipogenin UniProtKB/TrEMBL
UniProt A0A287CZT1 ENTREZGENE, UniProtKB/TrEMBL