Lias (lipoic acid synthetase) - Rat Genome Database

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Gene: Lias (lipoic acid synthetase) Ictidomys tridecemlineatus
Analyze
Symbol: Lias
Name: lipoic acid synthetase
RGD ID: 12655901
Description: ENCODES a protein that exhibits lipoate synthase activity (ortholog); INVOLVED IN inflammatory response (ortholog); lipoate biosynthetic process (ortholog); neural tube closure (ortholog); ASSOCIATED WITH Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); pneumonia (ortholog); pulmonary fibrosis (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: lipoic acid synthetase, transcript variant X1; lipoic acid synthetase, transcript variant X2; lipoic acid synthetase, transcript variant X3; lipoyl synthase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,212,659 - 39,229,901 (-)NCBI
SpeTri2.0NW_0049364827,068,326 - 7,085,571 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Lias
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,212,659 - 39,229,901 (-)NCBI
SpeTri2.0NW_0049364827,068,326 - 7,085,571 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIAS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl439,459,004 - 39,485,109 (+)EnsemblGRCh38hg38GRCh38
GRCh38439,459,056 - 39,479,506 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37439,460,676 - 39,481,126 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36439,137,060 - 39,155,668 (+)NCBINCBI36hg18NCBI36
Build 34439,283,230 - 39,301,835NCBI
Celera439,898,493 - 39,917,063 (+)NCBI
Cytogenetic Map4p14NCBI
HuRef438,785,637 - 38,804,275 (+)NCBIHuRef
CHM1_1439,460,097 - 39,478,701 (+)NCBICHM1_1
Lias
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,548,840 - 65,567,766 (+)NCBIGRCm39mm39
GRCm39 Ensembl565,548,840 - 65,568,036 (+)Ensembl
GRCm38565,391,497 - 65,410,423 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,391,497 - 65,410,693 (+)EnsemblGRCm38mm10GRCm38
MGSCv37565,782,736 - 65,800,446 (+)NCBIGRCm37mm9NCBIm37
MGSCv36565,670,632 - 65,688,342 (+)NCBImm8
Celera562,668,175 - 62,685,891 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
Lias
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21442,876,699 - 42,893,824 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1442,876,699 - 42,893,783 (-)Ensembl
Rnor_6.01444,507,217 - 44,524,287 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,507,218 - 44,524,252 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,326,598 - 44,343,665 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,575,334 - 45,592,514 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11445,577,725 - 45,594,905 (-)NCBI
Celera1442,027,393 - 42,044,418 (-)NCBICelera
Cytogenetic Map14p11NCBI
Lias
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554437,889,467 - 7,907,437 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554437,889,274 - 7,907,560 (-)NCBIChiLan1.0ChiLan1.0
LIAS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1439,639,960 - 39,657,805 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,639,960 - 39,657,805 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0433,787,804 - 33,806,289 (+)NCBIMhudiblu_PPA_v0panPan3
LIAS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,973,527 - 72,989,522 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl372,949,512 - 72,989,487 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha375,520,382 - 75,536,407 (-)NCBI
ROS_Cfam_1.0373,746,941 - 73,762,971 (-)NCBI
UMICH_Zoey_3.1373,013,540 - 73,029,564 (-)NCBI
UNSW_CanFamBas_1.0373,159,817 - 73,175,837 (-)NCBI
UU_Cfam_GSD_1.0373,546,343 - 73,562,369 (-)NCBI
LIAS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,699,330 - 30,720,335 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,699,278 - 30,717,009 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,314,342 - 32,332,042 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LIAS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12710,832,384 - 10,850,517 (-)NCBI
ChlSab1.1 Ensembl2710,829,865 - 10,850,552 (-)Ensembl
Vero_WHO_p1.0NW_02366604757,224,471 - 57,242,633 (-)NCBI
Lias
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248704,809,154 - 4,825,676 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005319922   ⟹   XP_005319979
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528539,212,659 - 39,229,901 (-)NCBI
SpeTri2.0NW_0049364827,068,338 - 7,085,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722732   ⟹   XP_021578407
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528539,212,659 - 39,229,901 (-)NCBI
SpeTri2.0NW_0049364827,068,336 - 7,085,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040292536   ⟹   XP_040148470
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528539,212,659 - 39,229,881 (-)NCBI
RefSeq Acc Id: XM_040292537   ⟹   XP_040148471
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528539,212,659 - 39,229,893 (-)NCBI
RefSeq Acc Id: XM_040292538   ⟹   XP_040148472
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528539,212,659 - 39,229,901 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005319979   ⟸   XM_005319922
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021578407   ⟸   XM_021722732
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040148472   ⟸   XM_040292538
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040148471   ⟸   XM_040292537
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040148470   ⟸   XM_040292536
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002082 ENTREZGENE
Ensembl Protein ENSSTOP00000001857 ENTREZGENE
NCBI Gene Lias ENTREZGENE