Chsy3 (chondroitin sulfate synthase 3) - Rat Genome Database

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Gene: Chsy3 (chondroitin sulfate synthase 3) Ictidomys tridecemlineatus
Analyze
Symbol: Chsy3
Name: chondroitin sulfate synthase 3
RGD ID: 12655708
Description: ENCODES a protein that exhibits acetylgalactosaminyltransferase activity (inferred); glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity (inferred); N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity (inferred); INVOLVED IN chondroitin sulfate biosynthetic process (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213141,374,905 - 141,626,875 (+)NCBI
SpeTri2.0NW_0049365042,948,878 - 2,952,518 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Chsy3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213141,374,905 - 141,626,875 (+)NCBI
SpeTri2.0NW_0049365042,948,878 - 2,952,518 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHSY3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385129,903,979 - 130,186,634 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl5129,904,465 - 130,186,634 (+)EnsemblGRCh38hg38GRCh38
GRCh375129,240,158 - 129,522,327 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365129,268,422 - 129,550,226 (+)NCBINCBI36hg18NCBI36
Celera5125,370,892 - 125,652,732 (+)NCBI
Cytogenetic Map5q23.3NCBI
HuRef5124,432,045 - 124,713,660 (+)NCBIHuRef
CHM1_15128,673,143 - 128,955,624 (+)NCBICHM1_1
T2T-CHM13v2.05130,423,273 - 130,705,475 (+)NCBI
Chsy3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391859,308,412 - 59,544,408 (+)NCBIGRCm39mm39
GRCm39 Ensembl1859,308,473 - 59,669,071 (+)Ensembl
GRCm381859,175,340 - 59,411,336 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1859,175,401 - 59,535,999 (+)EnsemblGRCm38mm10GRCm38
MGSCv371859,334,994 - 59,570,990 (+)NCBIGRCm37mm9NCBIm37
MGSCv361859,300,709 - 59,536,705 (+)NCBImm8
Celera1860,481,285 - 60,714,414 (+)NCBICelera
Cytogenetic Map18D3NCBI
Chsy3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21852,644,356 - 52,901,257 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1852,644,461 - 52,898,098 (+)Ensembl
Rnor_6.01854,243,626 - 54,497,475 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1854,243,949 - 54,496,585 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01853,477,339 - 53,731,655 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41854,963,517 - 55,273,226 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1850,748,557 - 51,001,455 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Chsy3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554152,748,777 - 2,991,782 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554152,748,776 - 2,994,041 (+)NCBIChiLan1.0ChiLan1.0
CHSY3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15131,491,059 - 131,772,060 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v05125,319,738 - 125,601,102 (+)NCBIMhudiblu_PPA_v0panPan3
CHSY3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,621,196 - 18,855,018 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,620,781 - 18,854,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1117,420,827 - 17,654,322 (+)NCBI
ROS_Cfam_1.01119,375,694 - 19,642,226 (+)NCBI
ROS_Cfam_1.0 Ensembl1119,375,694 - 19,641,379 (+)Ensembl
UMICH_Zoey_3.11118,100,068 - 18,370,955 (+)NCBI
UNSW_CanFamBas_1.01117,935,119 - 18,202,405 (+)NCBI
UU_Cfam_GSD_1.01118,549,166 - 18,816,845 (+)NCBI
CHSY3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2132,535,984 - 132,802,188 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12132,536,085 - 132,803,476 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22137,866,436 - 138,011,589 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHSY3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12332,803,714 - 33,088,720 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603444,921,259 - 45,206,662 (-)NCBIVero_WHO_p1.0
Chsy3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477411,174,047 - 11,466,657 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462477411,173,221 - 11,466,657 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021725670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021725670   ⟹   XP_021581345
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213141,374,905 - 141,626,875 (+)NCBI
SpeTri2.0NW_0049365042,948,878 - 2,952,518 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021581345 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3265949 (Get FASTA)   NCBI Sequence Viewer  
  KAG3265950 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021581345   ⟸   XM_021725670
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021825 UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000020603.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028476.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Chond_GalNAc UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene Chsy3 ENTREZGENE
Pfam CHGN UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3N8A7_ICTTR UniProtKB/TrEMBL