Arc (activity regulated cytoskeleton associated protein) - Rat Genome Database

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Gene: Arc (activity regulated cytoskeleton associated protein) Ictidomys tridecemlineatus
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Symbol: Arc
Name: activity regulated cytoskeleton associated protein
RGD ID: 12653948
Description: ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); cell migration (ortholog); cytoskeleton organization (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Cocaine-Related Disorders (ortholog); Hearing Loss (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,759,046 - 1,762,161 (+)NCBI
SpeTri2.0NW_0049364709,185,145 - 9,188,260 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Arc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,759,046 - 1,762,161 (+)NCBI
SpeTri2.0NW_0049364709,185,145 - 9,188,260 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8142,611,049 - 142,614,479 (-)EnsemblGRCh38hg38GRCh38
GRCh388142,611,049 - 142,614,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh378143,692,410 - 143,695,840 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368143,689,412 - 143,692,835 (-)NCBINCBI36hg18NCBI36
Build 348143,689,411 - 143,692,835NCBI
Celera8140,003,980 - 140,007,899 (-)NCBI
Cytogenetic Map8q24.3NCBI
HuRef8138,948,085 - 138,951,389 (-)NCBIHuRef
CHM1_18143,732,641 - 143,736,069 (-)NCBICHM1_1
Arc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391574,540,930 - 74,544,419 (-)NCBIGRCm39mm39
GRCm39 Ensembl1574,540,932 - 74,544,419 (-)Ensembl
GRCm381574,669,081 - 74,672,570 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1574,669,083 - 74,672,570 (-)EnsemblGRCm38mm10GRCm38
MGSCv371574,499,513 - 74,503,000 (-)NCBIGRCm37mm9NCBIm37
MGSCv361574,496,338 - 74,499,825 (-)NCBImm8
Celera1576,173,822 - 76,177,304 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.25NCBI
Arc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27106,555,968 - 106,559,697 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl7106,555,785 - 106,559,378 (-)Ensembl
Rnor_6.07115,907,097 - 115,911,059 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7115,907,097 - 115,910,541 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07115,812,499 - 115,815,958 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47112,771,937 - 112,775,381 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17112,806,166 - 112,809,611 (-)NCBI
Celera7102,957,256 - 102,960,700 (-)NCBICelera
Cytogenetic Map7q34NCBI
Arc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554541,379,998 - 1,383,414 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554541,379,998 - 1,383,414 (-)NCBIChiLan1.0ChiLan1.0
ARC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18142,365,962 - 142,369,309 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8142,367,995 - 142,369,185 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08139,320,366 - 139,323,802 (-)NCBIMhudiblu_PPA_v0panPan3
ARC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11336,743,027 - 36,744,266 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1336,609,093 - 36,612,592 (-)NCBI
ROS_Cfam_1.01337,136,507 - 37,140,000 (-)NCBI
UMICH_Zoey_3.11336,855,275 - 36,858,753 (-)NCBI
UNSW_CanFamBas_1.01336,944,976 - 36,948,432 (-)NCBI
UU_Cfam_GSD_1.01337,366,985 - 37,370,448 (-)NCBI
ARC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl41,517,980 - 1,521,403 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.141,517,986 - 1,521,403 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ARC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18136,857,402 - 136,860,933 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl8136,859,438 - 136,860,628 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660393,095,686 - 3,099,176 (+)NCBIVero_WHO_p1.0
Arc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473513,968,628 - 13,972,026 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005316120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005316120   ⟹   XP_005316177
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053031,759,046 - 1,762,161 (+)NCBI
SpeTri2.0NW_0049364709,185,145 - 9,188,260 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005316177 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3273506 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005316177   ⟸   XM_005316120
- UniProtKB: I3NEU2 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005258 ENTREZGENE
Ensembl Protein ENSSTOP00000022889 ENTREZGENE
Ensembl Transcript ENSSTOT00000005260 ENTREZGENE
NCBI Gene Arc ENTREZGENE
UniProt I3NEU2 ENTREZGENE