Vps33a (VPS33A core subunit of CORVET and HOPS complexes) - Rat Genome Database

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Gene: Vps33a (VPS33A core subunit of CORVET and HOPS complexes) Ictidomys tridecemlineatus
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Symbol: Vps33a
Name: VPS33A core subunit of CORVET and HOPS complexes
RGD ID: 12653248
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN pigmentation (ortholog); platelet formation (ortholog); regulation of developmental pigmentation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hermansky-Pudlak syndrome (ortholog); Mucopolysaccharidosis-Plus Syndrome (ortholog); FOUND IN AP-3 adaptor complex (ortholog); clathrin complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vacuolar protein sorting-associated protein 33A; VPS33A, CORVET/HOPS core subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,221,701 - 157,252,173 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365582,227,253 - 2,257,722 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365582,227,305 - 2,257,725 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Vps33a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,221,701 - 157,252,173 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365582,227,253 - 2,257,722 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365582,227,305 - 2,257,725 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS33A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,229,564 - 122,266,494 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12122,229,564 - 122,266,494 (-)EnsemblGRCh38hg38GRCh38
GRCh3712122,714,111 - 122,751,041 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,282,047 - 121,317,021 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412121,240,974 - 121,275,897NCBI
Celera12122,305,460 - 122,340,912 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12119,676,859 - 119,711,913 (-)NCBIHuRef
CHM1_112122,684,386 - 122,719,360 (-)NCBICHM1_1
T2T-CHM13v2.012122,225,350 - 122,262,283 (-)NCBIT2T-CHM13v2.0
Vps33a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,666,820 - 123,711,104 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5123,666,722 - 123,711,101 (-)EnsemblGRCm39 Ensembl
GRCm385123,528,757 - 123,573,043 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,528,659 - 123,573,038 (-)EnsemblGRCm38mm10GRCm38
MGSCv375123,978,766 - 124,023,024 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365123,789,720 - 123,833,624 (-)NCBIMGSCv36mm8
Celera5120,615,562 - 120,647,244 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.03NCBI
Vps33a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,685,484 - 38,710,668 (+)NCBIGRCr8
mRatBN7.21233,024,596 - 33,051,399 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1233,024,650 - 33,051,393 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1234,203,080 - 34,228,179 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,814,434 - 34,839,530 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,866,322 - 33,891,419 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,459,816 - 38,482,903 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,459,832 - 38,484,512 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,340,915 - 40,364,786 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41234,163,538 - 34,189,019 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11234,026,939 - 34,054,016 (+)NCBI
Celera1234,710,002 - 34,735,096 (+)NCBICelera
Cytogenetic Map12q16NCBI
Vps33a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554826,332,366 - 6,353,834 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554826,333,282 - 6,352,369 (+)NCBIChiLan1.0ChiLan1.0
VPS33A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210130,322,804 - 130,358,825 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112130,319,726 - 130,354,330 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012119,831,693 - 119,868,132 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112123,200,964 - 123,236,132 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12123,201,663 - 123,236,019 (-)Ensemblpanpan1.1panPan2
VPS33A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1267,090,669 - 7,119,913 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha267,250,848 - 7,282,200 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0267,342,147 - 7,373,504 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,342,183 - 7,373,504 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,274,298 - 7,305,672 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,365,289 - 7,396,615 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0267,320,923 - 7,352,308 (+)NCBIUU_Cfam_GSD_1.0
VPS33A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1430,469,070 - 30,495,470 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11430,469,003 - 30,496,626 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21432,196,959 - 32,221,702 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VPS33A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111117,585,325 - 117,618,713 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11117,582,781 - 117,615,743 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037127,711,627 - 127,745,396 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps33a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474722,461,346 - 22,478,867 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474722,458,098 - 22,478,735 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005329580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000014926   ⟹   ENSSTOP00000013371
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365582,227,253 - 2,257,722 (+)Ensembl
RefSeq Acc Id: XM_005329580   ⟹   XP_005329637
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118157,221,701 - 157,252,173 (-)NCBI
SpeTri2.0NW_0049365582,227,305 - 2,257,725 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005329637 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013371.2
RefSeq Acc Id: XP_005329637   ⟸   XM_005329580
- UniProtKB: I3MNU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000013371   ⟸   ENSSTOT00000014926


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014932 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014926.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.850 UniProtKB/TrEMBL
  3.40.50.1910 UniProtKB/TrEMBL
  3.40.50.2060 UniProtKB/TrEMBL
InterPro Sec-1-like_dom1 UniProtKB/TrEMBL
  Sec-1-like_dom3a UniProtKB/TrEMBL
  Sec1-like UniProtKB/TrEMBL
  Sec1-like_dom2 UniProtKB/TrEMBL
  Sec1-like_sf UniProtKB/TrEMBL
  VPS33_dom3b UniProtKB/TrEMBL
NCBI Gene Vps33a ENTREZGENE
PANTHER PTHR11679 UniProtKB/TrEMBL
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 33A UniProtKB/TrEMBL
Pfam Sec1 UniProtKB/TrEMBL
Superfamily-SCOP SSF56815 UniProtKB/TrEMBL
UniProt I3MNU1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Vps33a  VPS33A core subunit of CORVET and HOPS complexes    VPS33A, CORVET/HOPS core subunit  Symbol and/or name change 5135510 APPROVED