Actl7a (actin like 7A) - Rat Genome Database

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Gene: Actl7a (actin like 7A) Ictidomys tridecemlineatus
Analyze
Symbol: Actl7a
Name: actin like 7A
RGD ID: 12653217
Description: INVOLVED IN acrosome assembly (inferred); fertilization (inferred); single fertilization (inferred); ASSOCIATED WITH bladder urothelial carcinoma (ortholog); genetic disease (ortholog); male infertility (ortholog); FOUND IN acrosomal vesicle (inferred); cytoplasm (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin-like protein 7A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947179,279,866 - 179,281,368 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365593,985,327 - 3,986,649 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365593,983,288 - 3,986,932 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Actl7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947179,279,866 - 179,281,368 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365593,985,327 - 3,986,649 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365593,983,288 - 3,986,932 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTL7A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389108,862,266 - 108,863,756 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9108,862,266 - 108,863,756 (+)EnsemblGRCh38hg38GRCh38
GRCh379111,624,546 - 111,626,036 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369110,664,424 - 110,665,856 (+)NCBINCBI36Build 36hg18NCBI36
Build 349108,704,157 - 108,705,590NCBI
Celera982,123,898 - 82,125,330 (+)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef981,224,355 - 81,225,787 (+)NCBIHuRef
CHM1_19111,771,219 - 111,772,651 (+)NCBICHM1_1
T2T-CHM13v2.09121,031,393 - 121,032,883 (+)NCBIT2T-CHM13v2.0
Actl7a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39456,743,422 - 56,744,925 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl456,743,413 - 56,744,925 (+)EnsemblGRCm39 Ensembl
GRCm38456,743,422 - 56,744,925 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl456,743,413 - 56,744,925 (+)EnsemblGRCm38mm10GRCm38
MGSCv37456,756,294 - 56,757,797 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36456,837,501 - 56,838,971 (+)NCBIMGSCv36mm8
Celera456,651,325 - 56,652,828 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.66NCBI
Actl7a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8576,242,201 - 76,245,647 (+)NCBIGRCr8
mRatBN7.2571,447,447 - 71,450,440 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl571,447,071 - 71,450,908 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx573,336,422 - 73,337,897 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0575,167,856 - 75,169,331 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0575,139,932 - 75,141,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0573,494,582 - 73,498,012 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl573,496,027 - 73,497,609 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0577,653,984 - 77,655,459 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4574,649,956 - 74,651,431 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1574,655,068 - 74,656,543 (+)NCBI
Celera570,303,022 - 70,304,497 (+)NCBICelera
Cytogenetic Map5q24NCBI
Actl7a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541918,102,980 - 18,106,405 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541918,102,980 - 18,106,405 (-)NCBIChiLan1.0ChiLan1.0
ACTL7A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21130,542,675 - 30,545,968 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1930,545,039 - 30,548,332 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0980,014,898 - 80,016,379 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19108,188,077 - 108,189,597 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9108,188,166 - 108,189,473 (+)Ensemblpanpan1.1panPan2
ACTL7A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11164,031,305 - 64,033,908 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1164,032,358 - 64,033,788 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1162,434,226 - 62,436,139 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01165,166,116 - 65,168,030 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1165,166,603 - 65,167,910 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11163,687,312 - 63,689,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01163,706,106 - 63,708,019 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01164,399,081 - 64,400,995 (+)NCBIUU_Cfam_GSD_1.0
ACTL7A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1249,883,311 - 249,884,630 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11249,883,247 - 249,884,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21280,413,651 - 280,415,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACTL7A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11230,690,891 - 30,692,636 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1230,691,018 - 30,692,325 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603511,991,659 - 11,993,178 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Actl7a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247582,650,360 - 2,651,682 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247582,650,235 - 2,651,843 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005329731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000006396   ⟹   ENSSTOP00000016301
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365593,985,327 - 3,986,649 (-)Ensembl
RefSeq Acc Id: XM_005329731   ⟹   XP_005329788
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947179,279,866 - 179,281,368 (+)NCBI
SpeTri2.0NW_0049365593,983,288 - 3,986,932 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005329788 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016301.1
GenBank Protein KAG3287676 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005329788   ⟸   XM_005329731
- UniProtKB: I3MW06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000016301   ⟸   ENSSTOT00000006396
Protein Domains
Actin-like protein 7A N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006402 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006396.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.40 UniProtKB/TrEMBL
InterPro Actin UniProtKB/TrEMBL
  ACTL7A_N UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/TrEMBL
NCBI Gene Actl7a ENTREZGENE
PANTHER PTHR11937 UniProtKB/TrEMBL
  PTHR11937:SF167 UniProtKB/TrEMBL
Pfam Actin UniProtKB/TrEMBL
  ACTL7A_N UniProtKB/TrEMBL
PRINTS ACTIN UniProtKB/TrEMBL
SMART ACTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/TrEMBL
UniProt I3MW06 ENTREZGENE, UniProtKB/TrEMBL