Klf11 (KLF transcription factor 11) - Rat Genome Database

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Gene: Klf11 (KLF transcription factor 11) Ictidomys tridecemlineatus
Analyze
Symbol: Klf11
Name: KLF transcription factor 11
RGD ID: 12652855
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to peptide (ortholog); hemopoiesis (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); genetic disease (ortholog); Hepatomegaly (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Krueppel-like factor 11; Kruppel like factor 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629251,526,321 - 51,534,846 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365326,282,313 - 6,290,569 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Klf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629251,526,321 - 51,534,846 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365326,282,313 - 6,290,569 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38210,043,550 - 10,054,836 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl210,042,849 - 10,054,836 (+)EnsemblGRCh38hg38GRCh38
GRCh37210,183,677 - 10,194,963 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36210,101,133 - 10,112,414 (+)NCBINCBI36Build 36hg18NCBI36
Celera210,100,586 - 10,111,182 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef210,036,117 - 10,046,713 (+)NCBIHuRef
CHM1_1210,113,564 - 10,124,797 (+)NCBICHM1_1
T2T-CHM13v2.0210,072,326 - 10,083,576 (+)NCBIT2T-CHM13v2.0
Klf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391224,701,370 - 24,712,781 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1224,701,273 - 24,712,788 (+)EnsemblGRCm39 Ensembl
GRCm381224,651,371 - 24,662,782 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1224,651,274 - 24,662,789 (+)EnsemblGRCm38mm10GRCm38
MGSCv371225,336,236 - 25,347,647 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361225,240,353 - 25,251,754 (+)NCBIMGSCv36mm8
Celera1226,112,243 - 26,123,694 (+)NCBICelera
Cytogenetic Map12A1.3NCBI
cM Map128.49NCBI
Klf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8647,014,312 - 47,026,152 (+)NCBIGRCr8
mRatBN7.2641,285,699 - 41,297,548 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl641,285,842 - 41,297,550 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx641,608,755 - 41,620,386 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0641,923,562 - 41,935,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0641,356,708 - 41,368,339 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0643,829,812 - 43,841,649 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl643,829,945 - 43,841,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0660,701,310 - 60,724,151 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4642,296,221 - 42,307,925 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1642,283,152 - 42,309,011 (+)NCBI
Celera640,573,522 - 40,585,226 (+)NCBICelera
Cytogenetic Map6q16NCBI
Klf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554875,448,869 - 5,454,322 (+)NCBIChiLan1.0ChiLan1.0
KLF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212116,464,993 - 116,489,347 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A116,468,964 - 116,493,324 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A10,027,152 - 10,051,445 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A10,185,034 - 10,208,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A10,195,564 - 10,208,220 (+)Ensemblpanpan1.1panPan2
KLF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,038,282 - 7,049,880 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,010,313 - 7,049,426 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha176,965,333 - 6,976,823 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0177,136,573 - 7,148,112 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl177,139,227 - 7,145,865 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,028,519 - 7,040,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,030,745 - 7,042,292 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,044,796 - 7,056,291 (+)NCBIUU_Cfam_GSD_1.0
KLF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3126,418,996 - 126,429,897 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13126,419,011 - 126,429,890 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KLF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11497,574,930 - 97,586,398 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1497,573,555 - 97,586,256 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604514,725,977 - 14,737,662 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248655,023,074 - 5,031,347 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005327354   ⟹   XP_005327411
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629251,526,321 - 51,534,846 (+)NCBI
SpeTri2.0NW_0049365326,282,313 - 6,290,569 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327411 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005327411   ⟸   XM_005327354
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Klf11 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-12 Klf11  KLF transcription factor 11  Klf11  Kruppel like factor 11  Symbol and/or name change 5135510 APPROVED