Ppp1r16a (protein phosphatase 1 regulatory subunit 16A) - Rat Genome Database

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Gene: Ppp1r16a (protein phosphatase 1 regulatory subunit 16A) Ictidomys tridecemlineatus
Analyze
Symbol: Ppp1r16a
Name: protein phosphatase 1 regulatory subunit 16A
RGD ID: 12651247
Description: ENCODES a protein that exhibits enzyme inhibitor activity (inferred); myosin phosphatase regulator activity (inferred); ASSOCIATED WITH epidermolysis bullosa simplex with muscular dystrophy (ortholog); genetic disease (ortholog); holoprosencephaly (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303344,528 - 361,883 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,770,776 - 7,788,006 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,770,627 - 7,788,039 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppp1r16a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303344,528 - 361,883 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,770,776 - 7,788,006 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,770,627 - 7,788,039 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R16A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,477,982 - 144,502,121 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,477,969 - 144,502,121 (+)EnsemblGRCh38hg38GRCh38
GRCh378145,703,365 - 145,727,504 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,692,917 - 145,698,312 (+)NCBINCBI36Build 36hg18NCBI36
Build 348145,692,916 - 145,698,311NCBI
Celera8141,897,581 - 141,902,976 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,835,190 - 140,840,658 (+)NCBIHuRef
CHM1_18145,760,384 - 145,765,779 (+)NCBICHM1_1
T2T-CHM13v2.08145,647,722 - 145,671,886 (+)NCBIT2T-CHM13v2.0
Ppp1r16a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,555,843 - 76,579,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,555,815 - 76,579,119 (+)EnsemblGRCm39 Ensembl
GRCm381576,671,643 - 76,694,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,671,615 - 76,694,919 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,502,110 - 76,525,345 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,498,935 - 76,522,170 (+)NCBIMGSCv36mm8
Celera1578,165,292 - 78,188,525 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.25NCBI
Ppp1r16a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,272,307 - 110,295,452 (+)NCBIGRCr8
mRatBN7.27108,391,664 - 108,414,812 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,391,656 - 108,419,509 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,133,497 - 110,156,735 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,357,073 - 112,380,309 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,317,909 - 112,341,058 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,734,002 - 117,757,249 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,734,002 - 117,757,249 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,722,085 - 117,745,228 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,721,078 - 114,744,220 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,774,380 - 114,778,451 (+)NCBI
Celera7104,741,567 - 104,764,704 (+)NCBICelera
Cytogenetic Map7q34NCBI
Ppp1r16a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,119,774 - 3,128,774 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,097,218 - 3,127,896 (+)NCBIChiLan1.0ChiLan1.0
PPP1R16A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,969,468 - 161,993,464 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,498,554 - 137,522,524 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08141,245,047 - 141,269,015 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18144,234,295 - 144,257,811 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8144,252,884 - 144,257,593 (+)Ensemblpanpan1.1panPan2
PPP1R16A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,887,415 - 37,922,710 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,914,076 - 37,922,751 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,848,198 - 37,883,544 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,361,177 - 38,396,538 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11338,052,922 - 38,088,496 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,161,555 - 38,196,898 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,638,011 - 38,673,359 (+)NCBIUU_Cfam_GSD_1.0
PPP1R16A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,689,414 - 138,716,707 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,689,414 - 138,716,488 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,138,239 - 1,167,241 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r16a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,360,108 - 12,368,093 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,360,108 - 12,384,663 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000010137   ⟹   ENSSTOP00000009093
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364707,770,776 - 7,788,006 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035433   ⟹   ENSSTOP00000025494
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364707,770,776 - 7,788,006 (-)Ensembl
RefSeq Acc Id: XM_021723171   ⟹   XP_021578846
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303344,528 - 361,883 (-)NCBI
SpeTri2.0NW_0049364707,770,627 - 7,788,039 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040293460   ⟹   XP_040149394
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303344,528 - 361,883 (-)NCBI
RefSeq Acc Id: XM_040293462   ⟹   XP_040149396
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303344,528 - 361,883 (-)NCBI
RefSeq Acc Id: XM_040293463   ⟹   XP_040149397
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303344,528 - 349,653 (-)NCBI
RefSeq Acc Id: XM_040293464   ⟹   XP_040149398
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303344,528 - 349,653 (-)NCBI
RefSeq Acc Id: XP_021578846   ⟸   XM_021723171
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_040149394   ⟸   XM_040293460
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040149396   ⟸   XM_040293462
- Peptide Label: isoform X2
- UniProtKB: I3MEW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149398   ⟸   XM_040293464
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040149397   ⟸   XM_040293463
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000025494   ⟸   ENSSTOT00000035433
RefSeq Acc Id: ENSSTOP00000009093   ⟸   ENSSTOT00000010137


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010132 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010137.3 UniProtKB/TrEMBL
  ENSSTOT00000035433.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene Ppp1r16a ENTREZGENE
PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 UniProtKB/TrEMBL
  PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 16A UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt I3MEW6 ENTREZGENE, UniProtKB/TrEMBL