Prmt3 (protein arginine methyltransferase 3) - Rat Genome Database

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Gene: Prmt3 (protein arginine methyltransferase 3) Ictidomys tridecemlineatus
Analyze
Symbol: Prmt3
Name: protein arginine methyltransferase 3
RGD ID: 12650900
Description: ENCODES a protein that exhibits modified amino acid binding (ortholog); protein-arginine N-methyltransferase activity (ortholog); protein-arginine omega-N asymmetric methyltransferase activity (ortholog); INVOLVED IN dendritic spine morphogenesis (ortholog); peptidyl-arginine methylation (ortholog); peptidyl-arginine methylation, to asymmetrical-dimethyl arginine (ortholog); PARTICIPATES IN histidine metabolic pathway; histidinemia pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH asthma (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494742,462,572 - 42,589,987 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366541,336,429 - 1,461,476 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366541,336,546 - 1,464,959 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Prmt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494742,462,572 - 42,589,987 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366541,336,429 - 1,461,476 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366541,336,546 - 1,464,959 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRMT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381120,387,716 - 20,509,338 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1120,387,558 - 20,509,338 (+)EnsemblGRCh38hg38GRCh38
GRCh371120,409,262 - 20,530,884 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361120,365,679 - 20,487,349 (+)NCBINCBI36Build 36hg18NCBI36
Celera1120,541,661 - 20,662,994 (+)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1120,092,368 - 20,214,172 (+)NCBIHuRef
CHM1_11120,408,983 - 20,530,723 (+)NCBICHM1_1
T2T-CHM13v2.01120,508,397 - 20,629,944 (+)NCBIT2T-CHM13v2.0
Prmt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39749,428,067 - 49,508,016 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl749,428,094 - 49,508,013 (+)EnsemblGRCm39 Ensembl
GRCm38749,778,319 - 49,861,264 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl749,778,346 - 49,858,265 (+)EnsemblGRCm38mm10GRCm38
MGSCv37757,033,728 - 57,113,635 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36749,646,379 - 49,726,286 (+)NCBIMGSCv36mm8
Celera745,228,154 - 45,308,430 (+)NCBICelera
Cytogenetic Map7B4NCBI
cM Map731.44NCBI
Prmt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81108,628,899 - 108,718,803 (+)NCBIGRCr8
mRatBN7.2199,492,712 - 99,581,774 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,492,724 - 99,579,435 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1104,846,834 - 104,933,517 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01113,318,757 - 113,405,436 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01106,641,014 - 106,727,679 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01105,113,595 - 105,200,253 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1105,113,595 - 105,200,470 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01106,163,799 - 106,250,502 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4199,581,943 - 99,668,604 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1199,660,053 - 99,746,714 (+)NCBI
Celera193,691,794 - 93,778,258 (+)NCBICelera
Cytogenetic Map1q22NCBI
Prmt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554761,223,076 - 1,331,582 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554761,222,579 - 1,331,582 (+)NCBIChiLan1.0ChiLan1.0
PRMT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2922,688,983 - 22,817,065 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11122,648,763 - 22,776,831 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01120,412,419 - 20,538,295 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11120,324,196 - 20,449,681 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1120,324,196 - 20,449,681 (+)Ensemblpanpan1.1panPan2
PRMT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12142,406,327 - 42,530,157 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2142,406,314 - 42,528,116 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2141,882,566 - 42,006,278 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02143,527,769 - 43,650,988 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2143,527,763 - 43,653,579 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12142,529,594 - 42,653,065 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02142,705,438 - 42,829,263 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02143,087,080 - 43,211,034 (+)NCBIUU_Cfam_GSD_1.0
PRMT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl238,884,362 - 39,032,996 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1238,884,311 - 39,032,944 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2241,911,569 - 41,930,041 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRMT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,486,165 - 44,621,002 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl144,485,880 - 44,620,936 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038141,822,116 - 141,955,377 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prmt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476611,670,108 - 11,795,272 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476611,669,732 - 11,797,133 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000011243   ⟹   ENSSTOP00000010085
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366541,336,429 - 1,461,476 (+)Ensembl
RefSeq Acc Id: XM_005335955   ⟹   XP_005336012
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494742,462,572 - 42,589,986 (-)NCBI
SpeTri2.0NW_0049366541,336,624 - 1,464,959 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005335956   ⟹   XP_005336013
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494742,462,572 - 42,589,987 (-)NCBI
SpeTri2.0NW_0049366541,336,626 - 1,464,959 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005335957   ⟹   XP_005336014
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494742,462,572 - 42,589,983 (-)NCBI
SpeTri2.0NW_0049366541,336,546 - 1,464,959 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005336012 (Get FASTA)   NCBI Sequence Viewer  
  XP_005336013 (Get FASTA)   NCBI Sequence Viewer  
  XP_005336014 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010085.3
GenBank Protein KAG3285590 (Get FASTA)   NCBI Sequence Viewer  
  KAG3285591 (Get FASTA)   NCBI Sequence Viewer  
  KAG3285592 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005336012   ⟸   XM_005335955
- Peptide Label: isoform X1
- UniProtKB: I3MGY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005336014   ⟸   XM_005335957
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005336013   ⟸   XM_005335956
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSTOP00000010085   ⟸   ENSSTOT00000011243
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011235 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011243.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
  Hnrnp arginine n-methyltransferase1 UniProtKB/TrEMBL
InterPro ANM3_Znf-C2H2 UniProtKB/TrEMBL
  Arg_MeTrfase UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Prmt3 ENTREZGENE
PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3 UniProtKB/TrEMBL
  PTHR11006 UniProtKB/TrEMBL
Pfam ANM3_C2H2_Zf UniProtKB/TrEMBL
  ANM3_zf-C2H2 UniProtKB/TrEMBL
  PrmA UniProtKB/TrEMBL
PROSITE SAM_MT_PRMT UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt I3MGY4 ENTREZGENE, UniProtKB/TrEMBL