Pdcd7 (programmed cell death 7) - Rat Genome Database

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Pathways
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Gene: Pdcd7 (programmed cell death 7) Ictidomys tridecemlineatus
Analyze
Symbol: Pdcd7
Name: programmed cell death 7
RGD ID: 12649613
Description: INVOLVED IN positive regulation of apoptotic signaling pathway (ortholog); positive regulation of T cell apoptotic process (ortholog); response to glucocorticoid (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN U12-type spliceosomal complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: programmed cell death protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640107,585,568 - 107,595,973 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647125,434,771 - 25,444,852 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647125,432,956 - 25,444,036 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Pdcd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640107,585,568 - 107,595,973 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647125,434,771 - 25,444,852 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647125,432,956 - 25,444,036 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDCD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381565,117,379 - 65,133,808 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1565,117,379 - 65,133,808 (-)EnsemblGRCh38hg38GRCh38
GRCh371565,409,717 - 65,426,146 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361563,196,770 - 63,213,227 (-)NCBINCBI36Build 36hg18NCBI36
Build 341563,196,770 - 63,213,227NCBI
Celera1542,287,881 - 42,304,338 (-)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1542,234,361 - 42,250,816 (-)NCBIHuRef
CHM1_11565,529,509 - 65,545,967 (-)NCBICHM1_1
T2T-CHM13v2.01562,926,802 - 62,943,229 (-)NCBIT2T-CHM13v2.0
Pdcd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,253,350 - 65,266,925 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl965,253,386 - 65,266,925 (+)EnsemblGRCm39 Ensembl
GRCm38965,346,068 - 65,359,643 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,346,104 - 65,359,643 (+)EnsemblGRCm38mm10GRCm38
MGSCv37965,193,875 - 65,207,450 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36965,144,074 - 65,157,649 (+)NCBIMGSCv36mm8
Celera962,576,093 - 62,589,612 (+)NCBICelera
Cytogenetic Map9CNCBI
cM Map935.25NCBI
Pdcd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8874,757,768 - 74,772,495 (+)NCBIGRCr8
mRatBN7.2865,862,606 - 65,877,333 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl865,862,387 - 65,877,333 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx871,375,034 - 71,389,758 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0869,648,040 - 69,662,764 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0867,517,585 - 67,532,315 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0870,860,671 - 70,875,471 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl870,860,671 - 70,875,471 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0870,553,737 - 70,568,103 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4869,590,408 - 69,605,671 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1869,609,536 - 69,624,725 (+)NCBI
Celera865,260,354 - 65,275,054 (+)NCBICelera
Cytogenetic Map8q24NCBI
Pdcd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545010,294,276 - 10,306,367 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545010,294,184 - 10,307,234 (+)NCBIChiLan1.0ChiLan1.0
PDCD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21654,349,202 - 54,380,150 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11558,520,781 - 58,551,740 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01544,057,667 - 44,073,812 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11562,341,731 - 62,357,969 (-)NCBIpanpan1.1PanPan1.1panPan2
PDCD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13029,498,290 - 29,510,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3029,475,498 - 29,510,575 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3029,428,204 - 29,441,228 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03029,688,009 - 29,700,874 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3029,661,429 - 29,701,072 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13029,620,077 - 29,633,127 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03029,682,120 - 29,695,027 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03029,922,911 - 29,935,386 (-)NCBIUU_Cfam_GSD_1.0
PDCD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,156,925 - 163,170,228 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,157,881 - 163,172,528 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21180,681,362 - 180,695,881 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDCD7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12618,457,101 - 18,470,020 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2618,457,166 - 18,469,525 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048122,959,057 - 122,976,881 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdcd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247817,368,782 - 7,383,435 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247817,369,305 - 7,383,437 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013357629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000003748   ⟹   ENSSTOP00000003358
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647125,434,771 - 25,444,852 (-)Ensembl
RefSeq Acc Id: XM_013357629   ⟹   XP_013213083
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640107,585,568 - 107,595,973 (-)NCBI
SpeTri2.0NW_00493647125,432,956 - 25,444,036 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013213083 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003358.3
GenBank Protein KAG3262068 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013213083   ⟸   XM_013357629
- Sequence:
RefSeq Acc Id: ENSSTOP00000003358   ⟸   ENSSTOT00000003748


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003742 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003748.3 UniProtKB/TrEMBL
InterPro PDCD7 UniProtKB/TrEMBL
NCBI Gene Pdcd7 ENTREZGENE
PANTHER PROGRAMMED CELL DEATH PROTEIN 7 UniProtKB/TrEMBL
  PROGRAMMED CELL DEATH PROTEIN 7 UniProtKB/TrEMBL
Pfam PDCD7 UniProtKB/TrEMBL
UniProt I3M2W4_ICTTR UniProtKB/TrEMBL