Prorp (protein only RNase P catalytic subunit)

Gene: Prorp (protein only RNase P catalytic subunit) Ictidomys tridecemlineatus

Analyze

Symbol:

Prorp

Name:

protein only RNase P catalytic subunit

RGD ID:

12648080

Description:

ENCODES a protein that exhibits ribonuclease P activity (inferred); INVOLVED IN mitochondrial tRNA 5'-end processing (inferred); tRNA 5'-leader removal (inferred); tRNA processing (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); combined oxidative phosphorylation deficiency 54 (ortholog); Developmental Disabilities (ortholog); FOUND IN mitochondrial nucleoid (ortholog); mitochondrial ribonuclease P complex (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Kiaa0391; KIAA0391 ortholog; mitochondrial ribonuclease P catalytic subunit; mitochondrial ribonuclease P protein 3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	45,776,936 - 45,908,465 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936494	9,282,894 - 9,414,350 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

combined oxidative phosphorylation deficiency 54 (ISO)

Developmental Disabilities (ISO)

ectodermal dysplasia and immunodeficiency 2 (ISO)

genetic disease (ISO)

Leukoencephalopathies (ISO)

Myoectodermal Gonadal Dysgenesis Syndrome (ISO)

Perrault Syndrome 1 (ISO)

spermatogenic failure 36 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial tRNA 5'-end processing (IEA)

tRNA 5'-leader removal (IEA)

tRNA processing (IEA)

Cellular Component

intracellular membrane-bounded organelle (IEA)

mitochondrial nucleoid (ISO)

mitochondrial ribonuclease P complex (IEA,ISO)

mitochondrion (IEA)

nucleoplasm (ISO)

Molecular Function

ribonuclease P activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Prorp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	45,776,936 - 45,908,465 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936494	9,282,894 - 9,414,350 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRORP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	35,121,839 - 35,277,622 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	35,121,846 - 35,277,622 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	35,591,758 - 35,746,828 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	34,661,527 - 34,813,022 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	15,455,607 - 15,607,100 (+)	NCBI		Celera
Cytogenetic Map	14	q13.2	NCBI
HuRef	14	15,704,222 - 15,857,638 (+)	NCBI		HuRef
CHM1_1	14	35,591,261 - 35,743,020 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	29,318,793 - 29,465,226 (+)	NCBI		T2T-CHM13v2.0

Prorp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	55,349,422 - 55,429,276 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	55,346,362 - 55,429,318 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	55,302,637 - 55,382,492 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	55,299,577 - 55,382,533 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	56,403,624 - 56,483,478 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	56,220,753 - 56,300,617 (+)	NCBI		MGSCv36	mm8
Celera	12	56,446,616 - 56,531,738 (+)	NCBI		Celera
Cytogenetic Map	12	C1	NCBI
cM Map	12	23.91	NCBI

Prorp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	78,404,821 - 78,497,562 (+)	NCBI		GRCr8
mRatBN7.2	6	72,669,659 - 72,762,419 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	72,670,847 - 72,762,416 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	73,093,590 - 73,182,668 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	73,399,942 - 73,489,024 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	72,828,549 - 72,917,703 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	76,079,880 - 76,171,298 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	76,079,880 - 76,171,296 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	85,614,276 - 85,708,817 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	75,539,870 - 75,633,118 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	75,543,495 - 75,636,184 (+)	NCBI
Celera	6	71,512,144 - 71,602,932 (+)	NCBI		Celera
Cytogenetic Map	6	q23	NCBI

Prorp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	25,791,575 - 25,920,077 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	25,791,209 - 25,920,651 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRORP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	36,432,152 - 36,590,190 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	35,648,655 - 35,808,108 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	15,871,707 - 16,027,634 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	34,056,234 - 34,209,657 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	34,056,620 - 34,209,657 (+)	Ensembl	panpan1.1		panPan2

PRORP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	13,885,734 - 14,007,224 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	13,681,902 - 13,803,857 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	13,991,929 - 14,113,298 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	13,992,144 - 14,113,292 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	13,693,596 - 13,814,946 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	13,758,157 - 13,879,746 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	14,047,450 - 14,169,639 (+)	NCBI		UU_Cfam_GSD_1.0

PRORP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	64,620,517 - 64,762,428 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	64,620,514 - 64,763,272 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	69,530,089 - 69,535,675 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRORP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	11,936,410 - 12,081,721 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	11,936,410 - 12,083,519 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	897,654 - 1,044,936 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005322681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013357452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013357453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005322681 ⟹ XP_005322738

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	45,777,337 - 45,908,465 (+)	NCBI
SpeTri2.0	NW_004936494	9,283,089 - 9,414,350 (+)	NCBI

Sequence:

show sequence

GCACCACGTGATTCAGGAGTTCACGGGTGCTTCCGGCTTGAGAGACGCGACTTCTACACAATTT
TTTTTTTCATTCTTCTGGAGACGCTAACGGTCTCTAGAATGTACAGACGCTTCAGTAGGGCCGT
TTCCATCCCACCCCGCCTCCGGCACTACACGTTTCAAAATTGCCTTTTTTCTTGCCGCCAGGCC
TTGCCCAACGCGTGCCACTCCCCGGCGTGCCCTCGGTAGCGCGGTGCGTTGTGGACACCGTAGT
TTCCGCCGCGTCTAAGGTTGGGTTAAGCCTGAGTACTGTGGTTCTCGGACAGGAATATAACAGA
CACCAGAAAATCCCTTCTTTGTCTCCTGGCTTAGGACTTAGGACTGATGTTGGACATCGCCTGA
TCATTGCTTTTTTTGCTGTTGGTAGCCTCCAAAGCAGAACCTTGGTTTGACTGTAATAGAAACG
GAGTCTCCTTTTTTAAAAAGTGGCGCTTTGACCCACTACTCTAAACCCCAATTCCTTAATTTTG
TTGTGGAAGTAGGCGTTTTGGGGGAACATCTTGATCACAGGTGCTGATCTCACTGCATAATGAC
TTTTTTGTTGTCAGGTATTCAAAGCTTTTCTAAGCTTTGGAAGTGCAGCCCATGCTTTGGGCTA
AGCCCAGGGCACTCTTGCTGCTTCTTCCTCTCAGACTACTGTGGCATCAGGAACCAACAGAGAT
GGTTTTCTCTCAAAAGCATGTCTCCACAAAGTACCAAAGCTGGGAACGCATCAATTGCCAAGGC
CAGATATCTCAGGAAAGGTGATGAAGGCAGAAATAAGCAAGTTTCTTCTGATTCTCCTCATCTT
TTTGCAGCCGGAGCAGCTAAAAAGAGATCACAGATGAATCCTCAGAGTAATGATCAAGACTTGT
CACCTGTGAAGAATATTTCTATTCAACTCCCAACAAAACCTTTGAATTCCAAGGAGTGGGATAA
ACTTAAGGAAGACTTTAAAGGAAAGGTCAATTTTGAGAATTGGATAAGTTCACAGATGGCTCGC
TGCCATAGCCCTATAGATGTGGCTAAATCTCTGCTGGCATGGGTAGCAGCAAAAAACAATGGTA
TTGTAGGCTATAATTTACTGGTCAGGTATTTGTATCTCTGTGTCTTTCATAAGCAGACTTCAGA
AGTTATTGATGTCTATGAAATCATGAGAGCCAGATACAAGACGTTAGAATCTGGGGGTTACAGT
CTTCTCATTCGGGGATTGACGCATTCAGACAGATGGAGAGAGGCCTTGATGCTATTAGAAGATA
TTAAAAAAGTCATGACCCCTTCAATAAAGAACTATAATGACTGTATCCAAGGGGCTCTCCTTCA
TCAAGATGTGAACACAGCCTGGAATTTGTATCAGGAATTGCTAGGTCATGATCTTATTCCTATG
TTGGAAACTTTAAAAGCCTTCTTTGATTTTGGAAAAGACATAAAGGATGATCACTATTCCAGCA
AACTACTTGACATTCTTTTGTATTTAAGAAATAATCAACTATATCCTGGGGAGTCATTTGCACA
CAGTATAAAAACATGGTTTGAGAGTGTTCCTGGAAAACAATGGAAAGGACAATTCACCACAATC
CAGAAAAGTGGTCAGTGTTCGTGCTGTGGAAAAACCATGGAGTCTATTCATCTGAGTCCAGAAG
AGTATGAATTTCTTAAGAGAAAAATCATAAGGGATGTAATAGATGGAGGAGACCAATATAAAAA
GACAACACCTCAGGAACTGAAGAGGTTTGAGAACTTTGTAAAATCCTGTCCTCCTTTTGATATA
GTCATTGATGGCCTCAATGTTGCCAAAATGTTTCCTAAAGCTCGTGAATCTCAAGTTCTCTTGG
ATGTAGTTTCTCAACTAGCCAAACAGAATCTGCAACTGCTGGTCCTGGGCCGGAAGCACATGCT
AACACAGCGTTTCCGGTGGAGAAAGGATGAGATGGAAAAAGTGCAAAAGCAAGCCAACTGTTTT
TTTGCTGATGACATCTCAGAAGATGATCCATTCCTTCTATATGCCACACTGAATTCGGGGAATC
ACTGCAAGTTTATCACAAAAGACCTAATGCGGGACCACAAGGCCTGTCTAGCTGATATCAAGAC
CCAACGTCTGTTCTTTAAGTGGCAGCAAGGACATCAGCTGGCAATTATAAATAGGTTTCCAGGA
TCAAAAATAACCTTTCAGCATATTCTCACCTATGACACAGTGGTGCAAACAACTGGAGACTCCT
GGCACATACCATATGATGAAGACCTGGTGGAAAGATATTCCTATGAAGTGCCAACCAAATGGCT
TTGTCTTCACCGAAAGACATAAAGACTCTTACCCCTATGCTAAATTTGTGTTTGGTGCCCTCCT
TTGTTAGCATCAGAGCTCTGGTGTTTTTATTGTTTTGTGGGGTTTTTTTAGCACTGGGATTAGA
CCCAGAGGCACTCTACCACTGAGATACATCCCCAGTTTTTTTTGTTTTTTATTTTGAGATAGTG
TCTCACTAAGTTGAGAGCCTCGGCCTCCTAAGTTGAGGGGAGTGCCCGGCAGCTTCAGAGCTGT
TTAATGCTCGCTTAGAGCATTGCCTCTGTCCTGAAGATAAAAGGGTTTTATTAATACTATTTGG
TTCTATTGGTTTATGTCAATAAATTGTTATTTTAAGTAAATGATACATAATATCTTTTCTAATT
AGCTGCATTTTTTCCACTAACATTTGCTTTTTGGAGGCTTATCCAGAATTGAGGAACTTAATGA
AGCCTAAACCATGGGGTCAGCTATTCCACTTAGCTTGGAGGACAGATAGTTCTTCTAGTATCCA
TTTTGCTGCTTCTGACTTCACCTTCCATTCCCACCAATTATTTCTTCTTCATTTAATTAAGTTA
ATTAAAATAATTA

hide sequence

RefSeq Acc Id:

XM_013357452 ⟹ XP_013212906

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	45,776,936 - 45,908,465 (+)	NCBI
SpeTri2.0	NW_004936494	9,282,894 - 9,414,350 (+)	NCBI

Sequence:

show sequence

GAAGGCCGCCCAACCGCCATCTTTGATGTGGGCGGAAGTCTTGGCTAAAGGAAAAAAACGGCCA
CTGTTCTCGGACAGGAATATAACAGACACCAGAAAATCCCTTCTTTGTCTCCTGGCTTAGGACT
TAGGACTGATGTTGGACATCGCCTGATCATTGCTTTTTTTGCTGTTGGTAGCCTCCAAAGCAGA
ACCTTGGTTTGACTGTAATAGAAACGGAGTCTCCTTTTTTAAAAAGTGGCGCTTTGACCCACTA
CTCTAAACCCCAATTCCTTAATTTTGTTGTGGAAGTAGGCGTTTTGGGGGAACATCTTGATCAC
AGGTGCTGATCTCACTGCATAATGACTTTTTTGTTGTCAGGTATTCAAAGCTTTTCTAAGCTTT
GGAAGTGCAGCCCATGCTTTGGGCTAAGCCCAGGGCACTCTTGCTGCTTCTTCCTCTCAGACTA
CTGTGGCATCAGGAACCAACAGAGATGGTTTTCTCTCAAAAGCATGTCTCCACAAAGTACCAAA
GCTGGGAACGCATCAATTGCCAAGGCCAGATATCTCAGGAAAGGTGATGAAGGCAGAAATAAGC
AAGTTTCTTCTGATTCTCCTCATCTTTTTGCAGCCGGAGCAGCTAAAAAGAGATCACAGATGAA
TCCTCAGAGTAATGATCAAGACTTGTCACCTGTGAAGAATATTTCTATTCAACTCCCAACAAAA
CCTTTGAATTCCAAGGAGTGGGATAAACTTAAGGAAGACTTTAAAGGAAAGGTCAATTTTGAGA
ATTGGATAAGTTCACAGATGGCTCGCTGCCATAGCCCTATAGATGTGGCTAAATCTCTGCTGGC
ATGGGTAGCAGCAAAAAACAATGGTATTGTAGGCTATAATTTACTGGTCAGGTATTTGTATCTC
TGTGTCTTTCATAAGCAGACTTCAGAAGTTATTGATGTCTATGAAATCATGAGAGCCAGATACA
AGACGTTAGAATCTGGGGGTTACAGTCTTCTCATTCGGGGATTGACGCATTCAGACAGATGGAG
AGAGGCCTTGATGCTATTAGAAGATATTAAAAAAGTCATGACCCCTTCAATAAAGAACTATAAT
GACTGTATCCAAGGGGCTCTCCTTCATCAAGATGTGAACACAGCCTGGAATTTGTATCAGGAAT
TGCTAGGTCATGATCTTATTCCTATGTTGGAAACTTTAAAAGCCTTCTTTGATTTTGGAAAAGA
CATAAAGGATGATCACTATTCCAGCAAACTACTTGACATTCTTTTGTATTTAAGAAATAATCAA
CTATATCCTGGGGAGTCATTTGCACACAGTATAAAAACATGGTTTGAGAGTGTTCCTGGAAAAC
AATGGAAAGGACAATTCACCACAATCCAGAAAAGTGGTCAGTGTTCGTGCTGTGGAAAAACCAT
GGAGTCTATTCATCTGAGTCCAGAAGAGTATGAATTTCTTAAGAGAAAAATCATAAGGGATGTA
ATAGATGGAGGAGACCAATATAAAAAGACAACACCTCAGGAACTGAAGAGGTTTGAGAACTTTG
TAAAATCCTGTCCTCCTTTTGATATAGTCATTGATGGCCTCAATGTTGCCAAAATGTTTCCTAA
AGCTCGTGAATCTCAAGTTCTCTTGGATGTAGTTTCTCAACTAGCCAAACAGAATCTGCAACTG
CTGGTCCTGGGCCGGAAGCACATGCTAACACAGCGTTTCCGGTGGAGAAAGGATGAGATGGAAA
AAGTGCAAAAGCAAGCCAACTGTTTTTTTGCTGATGACATCTCAGAAGATGATCCATTCCTTCT
ATATGCCACACTGAATTCGGGGAATCACTGCAAGTTTATCACAAAAGACCTAATGCGGGACCAC
AAGGCCTGTCTAGCTGATATCAAGACCCAACGTCTGTTCTTTAAGTGGCAGCAAGGACATCAGC
TGGCAATTATAAATAGGTTTCCAGGATCAAAAATAACCTTTCAGCATATTCTCACCTATGACAC
AGTGGTGCAAACAACTGGAGACTCCTGGCACATACCATATGATGAAGACCTGGTGGAAAGATAT
TCCTATGAAGTGCCAACCAAATGGCTTTGTCTTCACCGAAAGACATAAAGACTCTTACCCCTAT
GCTAAATTTGTGTTTGGTGCCCTCCTTTGTTAGCATCAGAGCTCTGGTGTTTTTATTGTTTTGT
GGGGTTTTTTTAGCACTGGGATTAGACCCAGAGGCACTCTACCACTGAGATACATCCCCAGTTT
TTTTTGTTTTTTATTTTGAGATAGTGTCTCACTAAGTTGAGAGCCTCGGCCTCCTAAGTTGAGG
GGAGTGCCCGGCAGCTTCAGAGCTGTTTAATGCTCGCTTAGAGCATTGCCTCTGTCCTGAAGAT
AAAAGGGTTTTATTAATACTATTTGGTTCTATTGGTTTATGTCAATAAATTGTTATTTTAAGTA
AATGATACATAATATCTTTTCTAATTAGCTGCATTTTTTCCACTAACATTTGCTTTTTGGAGGC
TTATCCAGAATTGAGGAACTTAATGAAGCCTAAACCATGGGGTCAGCTATTCCACTTAGCTTGG
AGGACAGATAGTTCTTCTAGTATCCATTTTGCTGCTTCTGACTTCACCTTCCATTCCCACCAAT
TATTTCTTCTTCATTTAATTAAGTTAATTAAAATAATTA

hide sequence

RefSeq Acc Id:

XM_013357453 ⟹ XP_013212907

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	45,777,519 - 45,908,465 (+)	NCBI
SpeTri2.0	NW_004936494	9,283,391 - 9,414,350 (+)	NCBI

Sequence:

show sequence

TGTTGAATGAAGTGAACTTAAGAGAGATTCGTACATAGTCGTGTCCGCACCTTTCGAGGACCAC
GCTTTCTTATCTGAGTTGTTGGCGCGACAGACCCCCCCCCCCGTCCCCGCCTCCTCCAGGACTC
ATCTTCCCCCACCTGACGAATTTGGCGGCCTGGGGAGAGTTGTTAGGCAAGGGAGAGGGGCCAC
TAGATGGCTTTCGTCGCTGTCGCTGCTAGTGGGACTGGGGTTCTCGGACAGGAATATAACAGAC
ACCAGAAAATCCCTTCTTTGTCTCCTGGCTTAGGACTTAGGACTGATGTTGGACATCGCCTGAT
CATTGCTTTTTTTGCTGTTGGTAGCCTCCAAAGCAGAACCTTGGTTTGACTGTAATAGAAACGG
AGTCTCCTTTTTTAAAAAGTGGCGCTTTGACCCACTACTCTAAACCCCAATTCCTTAATTTTGT
TGTGGAAGTAGGCGTTTTGGGGGAACATCTTGATCACAGGTGCTGATCTCACTGCATAATGACT
TTTTTGTTGTCAGGTATTCAAAGCTTTTCTAAGCTTTGGAAGTGCAGCCCATGCTTTGGGCTAA
GCCCAGGGCACTCTTGCTGCTTCTTCCTCTCAGACTACTGTGGCATCAGGAACCAACAGAGATG
GTTTTCTCTCAAAAGCATGTCTCCACAAAGTACCAAAGCTGGGAACGCATCAATTGCCAAGGCC
AGATATCTCAGGAAAGGTGATGAAGGCAGAAATAAGCAAGTTTCTTCTGATTCTCCTCATCTTT
TTGCAGCCGGAGCAGCTAAAAAGAGATCACAGATGAATCCTCAGAGTAATGATCAAGACTTGTC
ACCTGTGAAGAATATTTCTATTCAACTCCCAACAAAACCTTTGAATTCCAAGGAGTGGGATAAA
CTTAAGGAAGACTTTAAAGGAAAGGTCAATTTTGAGAATTGGATAAGTTCACAGATGGCTCGCT
GCCATAGCCCTATAGATGTGGCTAAATCTCTGCTGGCATGGGTAGCAGCAAAAAACAATGGTAT
TGTAGGCTATAATTTACTGGTCAGGTATTTGTATCTCTGTGTCTTTCATAAGCAGACTTCAGAA
GTTATTGATGTCTATGAAATCATGAGAGCCAGATACAAGACGTTAGAATCTGGGGGTTACAGTC
TTCTCATTCGGGGATTGACGCATTCAGACAGATGGAGAGAGGCCTTGATGCTATTAGAAGATAT
TAAAAAAGTCATGACCCCTTCAATAAAGAACTATAATGACTGTATCCAAGGGGCTCTCCTTCAT
CAAGATGTGAACACAGCCTGGAATTTGTATCAGGAATTGCTAGGTCATGATCTTATTCCTATGT
TGGAAACTTTAAAAGCCTTCTTTGATTTTGGAAAAGACATAAAGGATGATCACTATTCCAGCAA
ACTACTTGACATTCTTTTGTATTTAAGAAATAATCAACTATATCCTGGGGAGTCATTTGCACAC
AGTATAAAAACATGGTTTGAGAGTGTTCCTGGAAAACAATGGAAAGGACAATTCACCACAATCC
AGAAAAGTGGTCAGTGTTCGTGCTGTGGAAAAACCATGGAGTCTATTCATCTGAGTCCAGAAGA
GTATGAATTTCTTAAGAGAAAAATCATAAGGGATGTAATAGATGGAGGAGACCAATATAAAAAG
ACAACACCTCAGGAACTGAAGAGGTTTGAGAACTTTGTAAAATCCTGTCCTCCTTTTGATATAG
TCATTGATGGCCTCAATGTTGCCAAAATGTTTCCTAAAGCTCGTGAATCTCAAGTTCTCTTGGA
TGTAGTTTCTCAACTAGCCAAACAGAATCTGCAACTGCTGGTCCTGGGCCGGAAGCACATGCTA
ACACAGCGTTTCCGGTGGAGAAAGGATGAGATGGAAAAAGTGCAAAAGCAAGCCAACTGTTTTT
TTGCTGATGACATCTCAGAAGATGATCCATTCCTTCTATATGCCACACTGAATTCGGGGAATCA
CTGCAAGTTTATCACAAAAGACCTAATGCGGGACCACAAGGCCTGTCTAGCTGATATCAAGACC
CAACGTCTGTTCTTTAAGTGGCAGCAAGGACATCAGCTGGCAATTATAAATAGGTTTCCAGGAT
CAAAAATAACCTTTCAGCATATTCTCACCTATGACACAGTGGTGCAAACAACTGGAGACTCCTG
GCACATACCATATGATGAAGACCTGGTGGAAAGATATTCCTATGAAGTGCCAACCAAATGGCTT
TGTCTTCACCGAAAGACATAAAGACTCTTACCCCTATGCTAAATTTGTGTTTGGTGCCCTCCTT
TGTTAGCATCAGAGCTCTGGTGTTTTTATTGTTTTGTGGGGTTTTTTTAGCACTGGGATTAGAC
CCAGAGGCACTCTACCACTGAGATACATCCCCAGTTTTTTTTGTTTTTTATTTTGAGATAGTGT
CTCACTAAGTTGAGAGCCTCGGCCTCCTAAGTTGAGGGGAGTGCCCGGCAGCTTCAGAGCTGTT
TAATGCTCGCTTAGAGCATTGCCTCTGTCCTGAAGATAAAAGGGTTTTATTAATACTATTTGGT
TCTATTGGTTTATGTCAATAAATTGTTATTTTAAGTAAATGATACATAATATCTTTTCTAATTA
GCTGCATTTTTTCCACTAACATTTGCTTTTTGGAGGCTTATCCAGAATTGAGGAACTTAATGAA
GCCTAAACCATGGGGTCAGCTATTCCACTTAGCTTGGAGGACAGATAGTTCTTCTAGTATCCAT
TTTGCTGCTTCTGACTTCACCTTCCATTCCCACCAATTATTTCTTCTTCATTTAATTAAGTTAA
TTAAAATAATTA

hide sequence

RefSeq Acc Id:

XM_021724695 ⟹ XP_021580370

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	45,777,039 - 45,908,465 (+)	NCBI
SpeTri2.0	NW_004936494	9,283,012 - 9,414,350 (+)	NCBI

Sequence:

show sequence

GCAAAATGCAAAACCGATTTTGAAGGCTAGAAAAAGGAAGACCTCGTATTTCTTAAGGGTTCTC
GGACAGGAATATAACAGACACCAGAAAATCCCTTCTTTGTCTCCTGGCTTAGGACTTAGGACTG
ATGTTGGACATCGCCTGATCATTGCTTTTTTTGCTGTTGGTAGCCTCCAAAGCAGAACCTTGGT
TTGACTGTAATAGAAACGGAGTCTCCTTTTTTAAAAAGTGGCGCTTTGACCCACTACTCTAAAC
CCCAATTCCTTAATTTTGTTGTGGAAGTAGGCGTTTTGGGGGAACATCTTGATCACAGGTGCTG
ATCTCACTGCATAATGACTTTTTTGTTGTCAGGTATTCAAAGCTTTTCTAAGCTTTGGAAGTGC
AGCCCATGCTTTGGGCTAAGCCCAGGGCACTCTTGCTGCTTCTTCCTCTCAGACTACTGTGGCA
TCAGGAACCAACAGAGATGGTTTTCTCTCAAAAGCATGTCTCCACAAAGTACCAAAGCTGGGAA
CGCATCAATTGCCAAGGCCAGATATCTCAGGAAAGGTGATGAAGGCAGAAATAAGCAAGTTTCT
TCTGATTCTCCTCATCTTTTTGCAGCCGGAGCAGCTAAAAAGAGATCACAGATGAATCCTCAGA
GTAATGATCAAGACTTGTCACCTGTGAAGAATATTTCTATTCAACTCCCAACAAAACCTTTGAA
TTCCAAGGAGTGGGATAAACTTAAGGAAGACTTTAAAGGAAAGGTCAATTTTGAGAATTGGATA
AGTTCACAGATGGCTCGCTGCCATAGCCCTATAGATGTGGCTAAATCTCTGCTGGCATGGGTAG
CAGCAAAAAACAATGGTATTGTAGGCTATAATTTACTGGTCAGGTATTTGTATCTCTGTGTCTT
TCATAAGCAGACTTCAGAAGTTATTGATGTCTATGAAATCATGAGAGCCAGATACAAGACGTTA
GAATCTGGGGGTTACAGTCTTCTCATTCGGGGATTGACGCATTCAGACAGATGGAGAGAGGCCT
TGATGCTATTAGAAGATATTAAAAAAGTCATGACCCCTTCAATAAAGAACTATAATGACTGTAT
CCAAGGGGCTCTCCTTCATCAAGATGTGAACACAGCCTGGAATTTGTATCAGGAATTGCTAGGT
CATGATCTTATTCCTATGTTGGAAACTTTAAAAGCCTTCTTTGATTTTGGAAAAGACATAAAGG
ATGATCACTATTCCAGCAAACTACTTGACATTCTTTTGTATTTAAGAAATAATCAACTATATCC
TGGGGAGTCATTTGCACACAGTATAAAAACATGGTTTGAGAGTGTTCCTGGAAAACAATGGAAA
GGACAATTCACCACAATCCAGAAAAGTGGTCAGTGTTCGTGCTGTGGAAAAACCATGGAGTCTA
TTCATCTGAGTCCAGAAGAGTATGAATTTCTTAAGAGAAAAATCATAAGGGATGTAATAGATGG
AGGAGACCAATATAAAAAGACAACACCTCAGGAACTGAAGAGGTTTGAGAACTTTGTAAAATCC
TGTCCTCCTTTTGATATAGTCATTGATGGCCTCAATGTTGCCAAAATGTTTCCTAAAGCTCGTG
AATCTCAAGTTCTCTTGGATGTAGTTTCTCAACTAGCCAAACAGAATCTGCAACTGCTGGTCCT
GGGCCGGAAGCACATGCTAACACAGCGTTTCCGGTGGAGAAAGGATGAGATGGAAAAAGTGCAA
AAGCAAGCCAACTGTTTTTTTGCTGATGACATCTCAGAAGATGATCCATTCCTTCTATATGCCA
CACTGAATTCGGGGAATCACTGCAAGTTTATCACAAAAGACCTAATGCGGGACCACAAGGCCTG
TCTAGCTGATATCAAGACCCAACGTCTGTTCTTTAAGTGGCAGCAAGGACATCAGCTGGCAATT
ATAAATAGGTTTCCAGGATCAAAAATAACCTTTCAGCATATTCTCACCTATGACACAGTGGTGC
AAACAACTGGAGACTCCTGGCACATACCATATGATGAAGACCTGGTGGAAAGATATTCCTATGA
AGTGCCAACCAAATGGCTTTGTCTTCACCGAAAGACATAAAGACTCTTACCCCTATGCTAAATT
TGTGTTTGGTGCCCTCCTTTGTTAGCATCAGAGCTCTGGTGTTTTTATTGTTTTGTGGGGTTTT
TTTAGCACTGGGATTAGACCCAGAGGCACTCTACCACTGAGATACATCCCCAGTTTTTTTTGTT
TTTTATTTTGAGATAGTGTCTCACTAAGTTGAGAGCCTCGGCCTCCTAAGTTGAGGGGAGTGCC
CGGCAGCTTCAGAGCTGTTTAATGCTCGCTTAGAGCATTGCCTCTGTCCTGAAGATAAAAGGGT
TTTATTAATACTATTTGGTTCTATTGGTTTATGTCAATAAATTGTTATTTTAAGTAAATGATAC
ATAATATCTTTTCTAATTAGCTGCATTTTTTCCACTAACATTTGCTTTTTGGAGGCTTATCCAG
AATTGAGGAACTTAATGAAGCCTAAACCATGGGGTCAGCTATTCCACTTAGCTTGGAGGACAGA
TAGTTCTTCTAGTATCCATTTTGCTGCTTCTGACTTCACCTTCCATTCCCACCAATTATTTCTT
CTTCATTTAATTAAGTTAATTAAAATAATTA

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Protein Sequences


Protein RefSeqs	XP_005322738	(Get FASTA)	NCBI Sequence Viewer
	XP_013212906	(Get FASTA)	NCBI Sequence Viewer
	XP_013212907	(Get FASTA)	NCBI Sequence Viewer
	XP_021580370	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000010557.3
GenBank Protein	KAG3261086	(Get FASTA)	NCBI Sequence Viewer
	KAG3261087	(Get FASTA)	NCBI Sequence Viewer
	KAG3261088	(Get FASTA)	NCBI Sequence Viewer
	KAG3261089	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013212906 ⟸ XM_013357452

- Sequence:

show sequence

MTFLLSGIQSFSKLWKCSPCFGLSPGHSCCFFLSDYCGIRNQQRWFSLKSMSPQSTKAGNASIA
KARYLRKGDEGRNKQVSSDSPHLFAAGAAKKRSQMNPQSNDQDLSPVKNISIQLPTKPLNSKEW
DKLKEDFKGKVNFENWISSQMARCHSPIDVAKSLLAWVAAKNNGIVGYNLLVRYLYLCVFHKQT
SEVIDVYEIMRARYKTLESGGYSLLIRGLTHSDRWREALMLLEDIKKVMTPSIKNYNDCIQGAL
LHQDVNTAWNLYQELLGHDLIPMLETLKAFFDFGKDIKDDHYSSKLLDILLYLRNNQLYPGESF
AHSIKTWFESVPGKQWKGQFTTIQKSGQCSCCGKTMESIHLSPEEYEFLKRKIIRDVIDGGDQY
KKTTPQELKRFENFVKSCPPFDIVIDGLNVAKMFPKARESQVLLDVVSQLAKQNLQLLVLGRKH
MLTQRFRWRKDEMEKVQKQANCFFADDISEDDPFLLYATLNSGNHCKFITKDLMRDHKACLADI
KTQRLFFKWQQGHQLAIINRFPGSKITFQHILTYDTVVQTTGDSWHIPYDEDLVERYSYEVPTK
WLCLHRKT

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RefSeq Acc Id:

XP_005322738 ⟸ XM_005322681

- Sequence:

show sequence

MTFLLSGIQSFSKLWKCSPCFGLSPGHSCCFFLSDYCGIRNQQRWFSLKSMSPQSTKAGNASIA
KARYLRKGDEGRNKQVSSDSPHLFAAGAAKKRSQMNPQSNDQDLSPVKNISIQLPTKPLNSKEW
DKLKEDFKGKVNFENWISSQMARCHSPIDVAKSLLAWVAAKNNGIVGYNLLVRYLYLCVFHKQT
SEVIDVYEIMRARYKTLESGGYSLLIRGLTHSDRWREALMLLEDIKKVMTPSIKNYNDCIQGAL
LHQDVNTAWNLYQELLGHDLIPMLETLKAFFDFGKDIKDDHYSSKLLDILLYLRNNQLYPGESF
AHSIKTWFESVPGKQWKGQFTTIQKSGQCSCCGKTMESIHLSPEEYEFLKRKIIRDVIDGGDQY
KKTTPQELKRFENFVKSCPPFDIVIDGLNVAKMFPKARESQVLLDVVSQLAKQNLQLLVLGRKH
MLTQRFRWRKDEMEKVQKQANCFFADDISEDDPFLLYATLNSGNHCKFITKDLMRDHKACLADI
KTQRLFFKWQQGHQLAIINRFPGSKITFQHILTYDTVVQTTGDSWHIPYDEDLVERYSYEVPTK
WLCLHRKT

hide sequence

RefSeq Acc Id:

XP_013212907 ⟸ XM_013357453

- Sequence:

show sequence

MTFLLSGIQSFSKLWKCSPCFGLSPGHSCCFFLSDYCGIRNQQRWFSLKSMSPQSTKAGNASIA
KARYLRKGDEGRNKQVSSDSPHLFAAGAAKKRSQMNPQSNDQDLSPVKNISIQLPTKPLNSKEW
DKLKEDFKGKVNFENWISSQMARCHSPIDVAKSLLAWVAAKNNGIVGYNLLVRYLYLCVFHKQT
SEVIDVYEIMRARYKTLESGGYSLLIRGLTHSDRWREALMLLEDIKKVMTPSIKNYNDCIQGAL
LHQDVNTAWNLYQELLGHDLIPMLETLKAFFDFGKDIKDDHYSSKLLDILLYLRNNQLYPGESF
AHSIKTWFESVPGKQWKGQFTTIQKSGQCSCCGKTMESIHLSPEEYEFLKRKIIRDVIDGGDQY
KKTTPQELKRFENFVKSCPPFDIVIDGLNVAKMFPKARESQVLLDVVSQLAKQNLQLLVLGRKH
MLTQRFRWRKDEMEKVQKQANCFFADDISEDDPFLLYATLNSGNHCKFITKDLMRDHKACLADI
KTQRLFFKWQQGHQLAIINRFPGSKITFQHILTYDTVVQTTGDSWHIPYDEDLVERYSYEVPTK
WLCLHRKT

hide sequence

RefSeq Acc Id:

XP_021580370 ⟸ XM_021724695

- Sequence:

show sequence

MTFLLSGIQSFSKLWKCSPCFGLSPGHSCCFFLSDYCGIRNQQRWFSLKSMSPQSTKAGNASIA
KARYLRKGDEGRNKQVSSDSPHLFAAGAAKKRSQMNPQSNDQDLSPVKNISIQLPTKPLNSKEW
DKLKEDFKGKVNFENWISSQMARCHSPIDVAKSLLAWVAAKNNGIVGYNLLVRYLYLCVFHKQT
SEVIDVYEIMRARYKTLESGGYSLLIRGLTHSDRWREALMLLEDIKKVMTPSIKNYNDCIQGAL
LHQDVNTAWNLYQELLGHDLIPMLETLKAFFDFGKDIKDDHYSSKLLDILLYLRNNQLYPGESF
AHSIKTWFESVPGKQWKGQFTTIQKSGQCSCCGKTMESIHLSPEEYEFLKRKIIRDVIDGGDQY
KKTTPQELKRFENFVKSCPPFDIVIDGLNVAKMFPKARESQVLLDVVSQLAKQNLQLLVLGRKH
MLTQRFRWRKDEMEKVQKQANCFFADDISEDDPFLLYATLNSGNHCKFITKDLMRDHKACLADI
KTQRLFFKWQQGHQLAIINRFPGSKITFQHILTYDTVVQTTGDSWHIPYDEDLVERYSYEVPTK
WLCLHRKT

hide sequence

Protein Domains

PRORP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000011766	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000011767.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.11980	UniProtKB/TrEMBL
InterPro	MRPP3	UniProtKB/TrEMBL
	PRORP_C	UniProtKB/TrEMBL
NCBI Gene	Kiaa0391	ENTREZGENE
PANTHER	PTHR13547:SF1	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	PRORP	UniProtKB/TrEMBL
UniProt	I3MHY6_ICTTR	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-16	Prorp	protein only RNase P catalytic subunit	Kiaa0391	KIAA0391 ortholog	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM