Tnfrsf13b (TNF receptor superfamily member 13B) - Rat Genome Database

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Gene: Tnfrsf13b (TNF receptor superfamily member 13B) Ictidomys tridecemlineatus
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Symbol: Tnfrsf13b
Name: TNF receptor superfamily member 13B
RGD ID: 12647239
Description: INVOLVED IN B cell homeostasis (ortholog); hematopoietic progenitor cell differentiation (ortholog); negative regulation of B cell proliferation (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); Brain Injuries (ortholog); FOUND IN external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor receptor superfamily member 13B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560262,229,931 - 62,240,434 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936741626,814 - 637,317 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tnfrsf13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560262,229,931 - 62,240,434 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936741626,814 - 637,317 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,939,081 - 16,972,118 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,929,816 - 16,972,118 (-)EnsemblGRCh38hg38GRCh38
GRCh371716,842,395 - 16,875,432 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361716,783,123 - 16,816,127 (-)NCBINCBI36Build 36hg18NCBI36
Build 341716,783,123 - 16,816,127NCBI
Celera1717,781,944 - 17,814,965 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1716,595,403 - 16,628,419 (-)NCBIHuRef
CHM1_11716,852,066 - 16,885,080 (-)NCBICHM1_1
T2T-CHM13v2.01716,885,160 - 16,918,195 (-)NCBIT2T-CHM13v2.0
Tnfrsf13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,017,567 - 61,040,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,017,581 - 61,040,198 (+)EnsemblGRCm39 Ensembl
GRCm381161,126,283 - 61,153,170 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,126,755 - 61,149,372 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,954,337 - 60,961,144 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,957,030 - 60,963,837 (+)NCBIMGSCv36mm8
MGSCv361161,570,527 - 61,577,334 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
Tnfrsf13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,301,336 - 46,322,460 (+)NCBIGRCr8
mRatBN7.21045,801,860 - 45,824,932 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,801,860 - 45,822,987 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,504,281 - 50,525,515 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01049,994,670 - 50,015,908 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,498,240 - 45,519,475 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,399,834 - 47,422,907 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,412,582 - 47,420,951 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,171,786 - 47,193,320 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,286,663 - 47,295,026 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1045,052,747 - 45,073,875 (+)NCBICelera
Cytogenetic Map10q22NCBI
Tnfrsf13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955577930,612 - 971,698 (+)NCBIChiLan1.0ChiLan1.0
TNFRSF13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21951,456,859 - 51,491,797 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11756,168,541 - 56,203,478 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01734,321,121 - 34,355,020 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11739,252,858 - 39,286,007 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1739,252,858 - 39,292,053 (+)Ensemblpanpan1.1panPan2
TNFRSF13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1542,448,976 - 42,483,792 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl542,449,053 - 42,482,740 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha542,587,504 - 42,621,275 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0542,556,817 - 42,590,605 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl542,556,902 - 42,590,595 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1542,523,368 - 42,557,148 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0542,470,788 - 42,504,567 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0542,663,264 - 42,698,311 (+)NCBIUU_Cfam_GSD_1.0
TNFRSF13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1261,246,062 - 61,270,146 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11261,245,976 - 61,270,154 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TNFRSF13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,980,927 - 16,012,572 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1615,981,392 - 15,993,593 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660594,906,206 - 4,937,394 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248494,498,388 - 4,511,593 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248494,468,365 - 4,511,891 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013364800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_013364800   ⟹   XP_013220254
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560262,229,931 - 62,240,434 (+)NCBI
SpeTri2.0NW_004936741626,814 - 637,317 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013220254 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015992.2
GenBank Protein KAG3270352 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013220254   ⟸   XM_013364800
- Sequence:
Protein Domains
TACI cysteine-rich


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026517 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029685.2 UniProtKB/TrEMBL
Gene3D-CATH Tumor necrosis factor receptor superfamily UniProtKB/TrEMBL
InterPro TACI_Cys-rich-dom UniProtKB/TrEMBL
  TNFR_13B UniProtKB/TrEMBL
NCBI Gene Tnfrsf13b ENTREZGENE
PANTHER PTHR15511 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 13B UniProtKB/TrEMBL
Pfam TACI-CRD2 UniProtKB/TrEMBL
PRINTS TNFACTORR13B UniProtKB/TrEMBL
Superfamily-SCOP TNF receptor-like UniProtKB/TrEMBL
UniProt I3MV47_ICTTR UniProtKB/TrEMBL